miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 159248 0.68 0.781018
Target:  5'- gGCUGgcauuauaucggugCAACGCCGCCacgcgGGCCUCggGGc -3'
miRNA:   3'- aCGGCa-------------GUUGUGGCGG-----UCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 72613 0.68 0.768291
Target:  5'- cGCCcUCAGCcccACCGCCua-CUUUCGGg -3'
miRNA:   3'- aCGGcAGUUG---UGGCGGucgGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 168896 0.68 0.740291
Target:  5'- uUGCCGccccgCAGCgcgACUGUCAGCagguUCUCGGa -3'
miRNA:   3'- -ACGGCa----GUUG---UGGCGGUCGg---AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 71891 0.68 0.759061
Target:  5'- gGCCGUCAcgcggacccucCugCGCgCGGCCUCUgaccUGGg -3'
miRNA:   3'- aCGGCAGUu----------GugGCG-GUCGGAGA----GCC- -5'
29084 5' -58.2 NC_006146.1 + 42712 0.68 0.748786
Target:  5'- cGCCG-CGGCGCCccccuggGCC-GCCUCcCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG-------CGGuCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 130750 0.68 0.72981
Target:  5'- cGCCGUCAACuCCagguaugGCCAGCCcccCUCc- -3'
miRNA:   3'- aCGGCAGUUGuGG-------CGGUCGGa--GAGcc -5'
29084 5' -58.2 NC_006146.1 + 130764 0.69 0.682106
Target:  5'- cGCCGcCcuguaccgcaagGACAUCGCgGGCCUCUCc- -3'
miRNA:   3'- aCGGCaG------------UUGUGGCGgUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 65293 0.69 0.711486
Target:  5'- gGCUGUgGaccuggcuGCGCUGCCucuugcGGCCUCUCGa -3'
miRNA:   3'- aCGGCAgU--------UGUGGCGG------UCGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 130925 0.69 0.721163
Target:  5'- gGCCG-CAGCAgCC-UCAGCCUCUCc- -3'
miRNA:   3'- aCGGCaGUUGU-GGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 62096 0.69 0.721163
Target:  5'- aGCCGUggcggCAGgACUGCUcGCCUCggCGGg -3'
miRNA:   3'- aCGGCA-----GUUgUGGCGGuCGGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 113876 0.69 0.682106
Target:  5'- aUGCCG-CAcucCACCGCCAccuCCUcCUCGGc -3'
miRNA:   3'- -ACGGCaGUu--GUGGCGGUc--GGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 48098 0.69 0.701746
Target:  5'- gGCCGaCAGCGCgGCCucGGCCgcccgucucuucUCUUGGa -3'
miRNA:   3'- aCGGCaGUUGUGgCGG--UCGG------------AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 39818 0.69 0.701746
Target:  5'- gGCCGUUGACGgcCCGgCGGCCUCggccgcacagUGGg -3'
miRNA:   3'- aCGGCAGUUGU--GGCgGUCGGAGa---------GCC- -5'
29084 5' -58.2 NC_006146.1 + 166705 0.7 0.622505
Target:  5'- -aCCGUCAugAagccgguucCCGCCgAGCCcgUCUCGGg -3'
miRNA:   3'- acGGCAGUugU---------GGCGG-UCGG--AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 62134 0.7 0.632464
Target:  5'- gGCCcUCAGaauuuCUGCCAGCCUCagGGa -3'
miRNA:   3'- aCGGcAGUUgu---GGCGGUCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 41847 0.7 0.642423
Target:  5'- gGCUGUCuGCGCCGgCgucugGGCCcagCUCGGg -3'
miRNA:   3'- aCGGCAGuUGUGGCgG-----UCGGa--GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 102572 0.7 0.662311
Target:  5'- gGCCGUCcuCGaCGCCAuCCUCUCGcGg -3'
miRNA:   3'- aCGGCAGuuGUgGCGGUcGGAGAGC-C- -5'
29084 5' -58.2 NC_006146.1 + 33414 0.7 0.652375
Target:  5'- cGCC-UgGGCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGcAgUUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 56595 0.7 0.652375
Target:  5'- cGCCGagccCGCCGCCGGUCUcCUCGc -3'
miRNA:   3'- aCGGCaguuGUGGCGGUCGGA-GAGCc -5'
29084 5' -58.2 NC_006146.1 + 107637 0.7 0.652375
Target:  5'- gGCUGUCAucuGCCGuCCAGCCaCUCaGGa -3'
miRNA:   3'- aCGGCAGUug-UGGC-GGUCGGaGAG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.