miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 129616 0.7 0.662311
Target:  5'- cGCCGUCucCGUCGCCGGguCCUCcgCGGg -3'
miRNA:   3'- aCGGCAGuuGUGGCGGUC--GGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 107637 0.7 0.652375
Target:  5'- gGCUGUCAucuGCCGuCCAGCCaCUCaGGa -3'
miRNA:   3'- aCGGCAGUug-UGGC-GGUCGGaGAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 33414 0.7 0.652375
Target:  5'- cGCC-UgGGCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGcAgUUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 56595 0.7 0.652375
Target:  5'- cGCCGagccCGCCGCCGGUCUcCUCGc -3'
miRNA:   3'- aCGGCaguuGUGGCGGUCGGA-GAGCc -5'
29084 5' -58.2 NC_006146.1 + 128206 0.7 0.662311
Target:  5'- cGCCG-CGGCGCCggGCCAGacgcuCUUUCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG--CGGUCg----GAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 113876 0.69 0.682106
Target:  5'- aUGCCG-CAcucCACCGCCAccuCCUcCUCGGc -3'
miRNA:   3'- -ACGGCaGUu--GUGGCGGUc--GGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 39818 0.69 0.701746
Target:  5'- gGCCGUUGACGgcCCGgCGGCCUCggccgcacagUGGg -3'
miRNA:   3'- aCGGCAGUUGU--GGCgGUCGGAGa---------GCC- -5'
29084 5' -58.2 NC_006146.1 + 130764 0.69 0.682106
Target:  5'- cGCCGcCcuguaccgcaagGACAUCGCgGGCCUCUCc- -3'
miRNA:   3'- aCGGCaG------------UUGUGGCGgUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 48098 0.69 0.701746
Target:  5'- gGCCGaCAGCGCgGCCucGGCCgcccgucucuucUCUUGGa -3'
miRNA:   3'- aCGGCaGUUGUGgCGG--UCGG------------AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 65293 0.69 0.711486
Target:  5'- gGCUGUgGaccuggcuGCGCUGCCucuugcGGCCUCUCGa -3'
miRNA:   3'- aCGGCAgU--------UGUGGCGG------UCGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 130925 0.69 0.721163
Target:  5'- gGCCG-CAGCAgCC-UCAGCCUCUCc- -3'
miRNA:   3'- aCGGCaGUUGU-GGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 62096 0.69 0.721163
Target:  5'- aGCCGUggcggCAGgACUGCUcGCCUCggCGGg -3'
miRNA:   3'- aCGGCA-----GUUgUGGCGGuCGGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 42712 0.68 0.748786
Target:  5'- cGCCG-CGGCGCCccccuggGCC-GCCUCcCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG-------CGGuCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 168896 0.68 0.740291
Target:  5'- uUGCCGccccgCAGCgcgACUGUCAGCagguUCUCGGa -3'
miRNA:   3'- -ACGGCa----GUUG---UGGCGGUCGg---AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 130750 0.68 0.72981
Target:  5'- cGCCGUCAACuCCagguaugGCCAGCCcccCUCc- -3'
miRNA:   3'- aCGGCAGUUGuGG-------CGGUCGGa--GAGcc -5'
29084 5' -58.2 NC_006146.1 + 43487 0.68 0.740291
Target:  5'- gGCCGUUGACACCGgcuCCGGCgg--CGGg -3'
miRNA:   3'- aCGGCAGUUGUGGC---GGUCGgagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 72613 0.68 0.768291
Target:  5'- cGCCcUCAGCcccACCGCCua-CUUUCGGg -3'
miRNA:   3'- aCGGcAGUUG---UGGCGGucgGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 62217 0.68 0.749725
Target:  5'- aGCCcu--GCGCCG-CAGCCUCUgGGc -3'
miRNA:   3'- aCGGcaguUGUGGCgGUCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 33293 0.68 0.768291
Target:  5'- gGCUGg--GCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 71891 0.68 0.759061
Target:  5'- gGCCGUCAcgcggacccucCugCGCgCGGCCUCUgaccUGGg -3'
miRNA:   3'- aCGGCAGUu----------GugGCG-GUCGGAGA----GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.