miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 111575 1.09 0.002029
Target:  5'- aUGCCGUCAACACCGCCAGCCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUGUGGCGGUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 13978 0.83 0.129494
Target:  5'- aGcCCGUCAGCGCCGCCacccaGGCCUCggcCGGg -3'
miRNA:   3'- aC-GGCAGUUGUGGCGG-----UCGGAGa--GCC- -5'
29084 5' -58.2 NC_006146.1 + 53396 0.81 0.162176
Target:  5'- cUGCCGUUAGCcaggagaaugACCGCgAGUCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUG----------UGGCGgUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 125664 0.77 0.294034
Target:  5'- gGCCGaCAACACC-CCAGCCUCcgucCGGu -3'
miRNA:   3'- aCGGCaGUUGUGGcGGUCGGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 127629 0.76 0.34351
Target:  5'- cUGCCGgaccUCcAgGCCGCCcuguGCCUCUCGGu -3'
miRNA:   3'- -ACGGC----AGuUgUGGCGGu---CGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 131096 0.75 0.374364
Target:  5'- gGCCGUCAACgGCCGCCgucccagaAGCCgggagCUcCGGg -3'
miRNA:   3'- aCGGCAGUUG-UGGCGG--------UCGGa----GA-GCC- -5'
29084 5' -58.2 NC_006146.1 + 115239 0.74 0.424037
Target:  5'- gGCCuUCAACGCCGCCuGgCUC-CGGc -3'
miRNA:   3'- aCGGcAGUUGUGGCGGuCgGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 58852 0.74 0.424037
Target:  5'- cGCCGUCAAgGCCGgCAGCCcCUUc- -3'
miRNA:   3'- aCGGCAGUUgUGGCgGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 94506 0.73 0.459262
Target:  5'- cGCCGUCGGCGCCcCCGGUCcCUCc- -3'
miRNA:   3'- aCGGCAGUUGUGGcGGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 33169 0.73 0.486674
Target:  5'- gGCUGg--GCACCGCCGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 117567 0.72 0.533975
Target:  5'- cGCCGcCccGCgGCCGCCgGGCCUcCUCGGg -3'
miRNA:   3'- aCGGCaGu-UG-UGGCGG-UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 114062 0.72 0.533975
Target:  5'- cUGCCGcCccCGCCGCCagaGGCCgcCUCGGg -3'
miRNA:   3'- -ACGGCaGuuGUGGCGG---UCGGa-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 121903 0.71 0.553359
Target:  5'- aGCUGggCAACGCC-CCAGCCUCccaGGu -3'
miRNA:   3'- aCGGCa-GUUGUGGcGGUCGGAGag-CC- -5'
29084 5' -58.2 NC_006146.1 + 110412 0.71 0.572948
Target:  5'- cGCCGUCGggggagcugGCcCC-CCGGCCUCUCa- -3'
miRNA:   3'- aCGGCAGU---------UGuGGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 52415 0.71 0.582805
Target:  5'- gGCCGUCAAgACCG-UGGCCUCUg-- -3'
miRNA:   3'- aCGGCAGUUgUGGCgGUCGGAGAgcc -5'
29084 5' -58.2 NC_006146.1 + 111137 0.71 0.601621
Target:  5'- gGCCGUCuggaaucgcagguAGCGCCGCUucaGGCg-CUCGGg -3'
miRNA:   3'- aCGGCAG-------------UUGUGGCGG---UCGgaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 166705 0.7 0.622505
Target:  5'- -aCCGUCAugAagccgguucCCGCCgAGCCcgUCUCGGg -3'
miRNA:   3'- acGGCAGUugU---------GGCGG-UCGG--AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 62134 0.7 0.632464
Target:  5'- gGCCcUCAGaauuuCUGCCAGCCUCagGGa -3'
miRNA:   3'- aCGGcAGUUgu---GGCGGUCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 41847 0.7 0.642423
Target:  5'- gGCUGUCuGCGCCGgCgucugGGCCcagCUCGGg -3'
miRNA:   3'- aCGGCAGuUGUGGCgG-----UCGGa--GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 33414 0.7 0.652375
Target:  5'- cGCC-UgGGCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGcAgUUGUGGCGGU-CGGa---GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.