miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 48021 0.67 0.829227
Target:  5'- gGCgGgggaGGCACgGCgGGCCggCUCGGg -3'
miRNA:   3'- aCGgCag--UUGUGgCGgUCGGa-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 91783 0.67 0.829227
Target:  5'- gUGCCGUgcUGGCAcCCGCgGGCCUUaCGa -3'
miRNA:   3'- -ACGGCA--GUUGU-GGCGgUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 106634 0.67 0.828409
Target:  5'- uUGCCG-CAGCGCCugcugcgGCCGGCUggUCaGGg -3'
miRNA:   3'- -ACGGCaGUUGUGG-------CGGUCGGagAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 55703 0.67 0.812552
Target:  5'- cGCCGcCGGggggcucugccCGCCGCUGGCCUCcgCGu -3'
miRNA:   3'- aCGGCaGUU-----------GUGGCGGUCGGAGa-GCc -5'
29084 5' -58.2 NC_006146.1 + 48868 0.67 0.803979
Target:  5'- aGCCGUCGgccuccagGCGCCagGCCugcGCCUCUUc- -3'
miRNA:   3'- aCGGCAGU--------UGUGG--CGGu--CGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 45802 0.67 0.803979
Target:  5'- gGCCGagGAaggcCGCCGCCAcggccGCCUCgaagaCGGa -3'
miRNA:   3'- aCGGCagUU----GUGGCGGU-----CGGAGa----GCC- -5'
29084 5' -58.2 NC_006146.1 + 25370 0.67 0.795258
Target:  5'- gUGuCCgGUCAACGCCGUCcGCCg--CGGc -3'
miRNA:   3'- -AC-GG-CAGUUGUGGCGGuCGGagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 98445 0.67 0.795258
Target:  5'- -aCCGguuUCGGCGCCGCCcgggggccAGUCUCUgGGu -3'
miRNA:   3'- acGGC---AGUUGUGGCGG--------UCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 50133 0.67 0.795258
Target:  5'- cGCCaGggacaugaGGCGCCGCCAGCgCUCgUCGu -3'
miRNA:   3'- aCGG-Cag------UUGUGGCGGUCG-GAG-AGCc -5'
29084 5' -58.2 NC_006146.1 + 153568 0.67 0.795258
Target:  5'- cUGCCGuggUCAGCuCCGUCAGgUUCUUGa -3'
miRNA:   3'- -ACGGC---AGUUGuGGCGGUCgGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 2776 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 1844 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 912 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 3708 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 155768 0.67 0.794378
Target:  5'- aGCUGUaGACcCCGCCgcagaagAGCCgCUCGGu -3'
miRNA:   3'- aCGGCAgUUGuGGCGG-------UCGGaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 47699 0.67 0.786397
Target:  5'- cUGCUGUC--CACCGCCcugugcucGGCC-CUCGa -3'
miRNA:   3'- -ACGGCAGuuGUGGCGG--------UCGGaGAGCc -5'
29084 5' -58.2 NC_006146.1 + 159248 0.68 0.781018
Target:  5'- gGCUGgcauuauaucggugCAACGCCGCCacgcgGGCCUCggGGc -3'
miRNA:   3'- aCGGCa-------------GUUGUGGCGG-----UCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 33293 0.68 0.768291
Target:  5'- gGCUGg--GCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 72613 0.68 0.768291
Target:  5'- cGCCcUCAGCcccACCGCCua-CUUUCGGg -3'
miRNA:   3'- aCGGcAGUUG---UGGCGGucgGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 156129 0.68 0.768291
Target:  5'- aGCCGcCAACAggugcccgagccCCGCCuGCCUgacCUCGu -3'
miRNA:   3'- aCGGCaGUUGU------------GGCGGuCGGA---GAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.