miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 912 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 1844 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 2776 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 3708 0.67 0.794378
Target:  5'- cGCCGcCccccgggaccccgGGCGCgCGCCGGCCUCcCGu -3'
miRNA:   3'- aCGGCaG-------------UUGUG-GCGGUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 13978 0.83 0.129494
Target:  5'- aGcCCGUCAGCGCCGCCacccaGGCCUCggcCGGg -3'
miRNA:   3'- aC-GGCAGUUGUGGCGG-----UCGGAGa--GCC- -5'
29084 5' -58.2 NC_006146.1 + 23737 0.66 0.852948
Target:  5'- cGCCgGUCuGCGCCGCCGccgggucaacuGCCg--CGGc -3'
miRNA:   3'- aCGG-CAGuUGUGGCGGU-----------CGGagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 25370 0.67 0.795258
Target:  5'- gUGuCCgGUCAACGCCGUCcGCCg--CGGc -3'
miRNA:   3'- -AC-GG-CAGUUGUGGCGGuCGGagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 33108 0.66 0.867826
Target:  5'- aGCCGg-GugGCCGCCGGCgggUUCgcCGGg -3'
miRNA:   3'- aCGGCagUugUGGCGGUCG---GAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 33169 0.73 0.486674
Target:  5'- gGCUGg--GCACCGCCGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 33293 0.68 0.768291
Target:  5'- gGCUGg--GCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 33414 0.7 0.652375
Target:  5'- cGCC-UgGGCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGcAgUUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 39818 0.69 0.701746
Target:  5'- gGCCGUUGACGgcCCGgCGGCCUCggccgcacagUGGg -3'
miRNA:   3'- aCGGCAGUUGU--GGCgGUCGGAGa---------GCC- -5'
29084 5' -58.2 NC_006146.1 + 41847 0.7 0.642423
Target:  5'- gGCUGUCuGCGCCGgCgucugGGCCcagCUCGGg -3'
miRNA:   3'- aCGGCAGuUGUGGCgG-----UCGGa--GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 42437 0.66 0.852948
Target:  5'- aGCUGggugcGCGCCGCCAGCauggCGGc -3'
miRNA:   3'- aCGGCagu--UGUGGCGGUCGgagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 42712 0.68 0.748786
Target:  5'- cGCCG-CGGCGCCccccuggGCC-GCCUCcCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG-------CGGuCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 43424 0.66 0.846003
Target:  5'- cGCCGUCuccucguccaucaguAGCcugcggGCCGCCacaucuggagcggcAGCCUcCUCGGc -3'
miRNA:   3'- aCGGCAG---------------UUG------UGGCGG--------------UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 43487 0.68 0.740291
Target:  5'- gGCCGUUGACACCGgcuCCGGCgg--CGGg -3'
miRNA:   3'- aCGGCAGUUGUGGC---GGUCGgagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 45802 0.67 0.803979
Target:  5'- gGCCGagGAaggcCGCCGCCAcggccGCCUCgaagaCGGa -3'
miRNA:   3'- aCGGCagUU----GUGGCGGU-----CGGAGa----GCC- -5'
29084 5' -58.2 NC_006146.1 + 47532 0.66 0.852948
Target:  5'- gUGUCGggGGCGCCGCCucGGuCCUCcucgCGGc -3'
miRNA:   3'- -ACGGCagUUGUGGCGG--UC-GGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 47699 0.67 0.786397
Target:  5'- cUGCUGUC--CACCGCCcugugcucGGCC-CUCGa -3'
miRNA:   3'- -ACGGCAGuuGUGGCGG--------UCGGaGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.