miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 168896 0.68 0.740291
Target:  5'- uUGCCGccccgCAGCgcgACUGUCAGCagguUCUCGGa -3'
miRNA:   3'- -ACGGCa----GUUG---UGGCGGUCGg---AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 166825 0.66 0.845222
Target:  5'- gUGCUGUCGACGCgGCCcgGGUC-CgcgUGGa -3'
miRNA:   3'- -ACGGCAGUUGUGgCGG--UCGGaGa--GCC- -5'
29084 5' -58.2 NC_006146.1 + 166705 0.7 0.622505
Target:  5'- -aCCGUCAugAagccgguucCCGCCgAGCCcgUCUCGGg -3'
miRNA:   3'- acGGCAGUugU---------GGCGG-UCGG--AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 164852 0.66 0.837313
Target:  5'- -uCCGUUAcCACCGUCAGUUgCUUGGa -3'
miRNA:   3'- acGGCAGUuGUGGCGGUCGGaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 159248 0.68 0.781018
Target:  5'- gGCUGgcauuauaucggugCAACGCCGCCacgcgGGCCUCggGGc -3'
miRNA:   3'- aCGGCa-------------GUUGUGGCGG-----UCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 156129 0.68 0.768291
Target:  5'- aGCCGcCAACAggugcccgagccCCGCCuGCCUgacCUCGu -3'
miRNA:   3'- aCGGCaGUUGU------------GGCGGuCGGA---GAGCc -5'
29084 5' -58.2 NC_006146.1 + 155768 0.67 0.794378
Target:  5'- aGCUGUaGACcCCGCCgcagaagAGCCgCUCGGu -3'
miRNA:   3'- aCGGCAgUUGuGGCGG-------UCGGaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 153568 0.67 0.795258
Target:  5'- cUGCCGuggUCAGCuCCGUCAGgUUCUUGa -3'
miRNA:   3'- -ACGGC---AGUUGuGGCGGUCgGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 131096 0.75 0.374364
Target:  5'- gGCCGUCAACgGCCGCCgucccagaAGCCgggagCUcCGGg -3'
miRNA:   3'- aCGGCAGUUG-UGGCGG--------UCGGa----GA-GCC- -5'
29084 5' -58.2 NC_006146.1 + 130925 0.69 0.721163
Target:  5'- gGCCG-CAGCAgCC-UCAGCCUCUCc- -3'
miRNA:   3'- aCGGCaGUUGU-GGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 130764 0.69 0.682106
Target:  5'- cGCCGcCcuguaccgcaagGACAUCGCgGGCCUCUCc- -3'
miRNA:   3'- aCGGCaG------------UUGUGGCGgUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 130750 0.68 0.72981
Target:  5'- cGCCGUCAACuCCagguaugGCCAGCCcccCUCc- -3'
miRNA:   3'- aCGGCAGUUGuGG-------CGGUCGGa--GAGcc -5'
29084 5' -58.2 NC_006146.1 + 129616 0.7 0.662311
Target:  5'- cGCCGUCucCGUCGCCGGguCCUCcgCGGg -3'
miRNA:   3'- aCGGCAGuuGUGGCGGUC--GGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 128206 0.7 0.662311
Target:  5'- cGCCG-CGGCGCCggGCCAGacgcuCUUUCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG--CGGUCg----GAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 127629 0.76 0.34351
Target:  5'- cUGCCGgaccUCcAgGCCGCCcuguGCCUCUCGGu -3'
miRNA:   3'- -ACGGC----AGuUgUGGCGGu---CGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 127622 0.66 0.85974
Target:  5'- -cCUGggCGGCACCGCCGgcccgcuGCCUCUUGu -3'
miRNA:   3'- acGGCa-GUUGUGGCGGU-------CGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 127200 0.66 0.867826
Target:  5'- cGCCaggaccUgGACGCCGUaguGGCCUuCUCGGa -3'
miRNA:   3'- aCGGc-----AgUUGUGGCGg--UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 125664 0.77 0.294034
Target:  5'- gGCCGaCAACACC-CCAGCCUCcgucCGGu -3'
miRNA:   3'- aCGGCaGUUGUGGcGGUCGGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 121903 0.71 0.553359
Target:  5'- aGCUGggCAACGCC-CCAGCCUCccaGGu -3'
miRNA:   3'- aCGGCa-GUUGUGGcGGUCGGAGag-CC- -5'
29084 5' -58.2 NC_006146.1 + 119301 0.66 0.845222
Target:  5'- gGCUGUCccGACGCaaCCGGCCUCaguccccccuUCGGc -3'
miRNA:   3'- aCGGCAG--UUGUGgcGGUCGGAG----------AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.