miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 117567 0.72 0.533975
Target:  5'- cGCCGcCccGCgGCCGCCgGGCCUcCUCGGg -3'
miRNA:   3'- aCGGCaGu-UG-UGGCGG-UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 115239 0.74 0.424037
Target:  5'- gGCCuUCAACGCCGCCuGgCUC-CGGc -3'
miRNA:   3'- aCGGcAGUUGUGGCGGuCgGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 114062 0.72 0.533975
Target:  5'- cUGCCGcCccCGCCGCCagaGGCCgcCUCGGg -3'
miRNA:   3'- -ACGGCaGuuGUGGCGG---UCGGa-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 113876 0.69 0.682106
Target:  5'- aUGCCG-CAcucCACCGCCAccuCCUcCUCGGc -3'
miRNA:   3'- -ACGGCaGUu--GUGGCGGUc--GGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 113825 0.66 0.860485
Target:  5'- cGCCGcUCGuggacuACGCCGUCuuCCUCcCGGg -3'
miRNA:   3'- aCGGC-AGU------UGUGGCGGucGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 111575 1.09 0.002029
Target:  5'- aUGCCGUCAACACCGCCAGCCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUGUGGCGGUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 111137 0.71 0.601621
Target:  5'- gGCCGUCuggaaucgcagguAGCGCCGCUucaGGCg-CUCGGg -3'
miRNA:   3'- aCGGCAG-------------UUGUGGCGG---UCGgaGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 110412 0.71 0.572948
Target:  5'- cGCCGUCGggggagcugGCcCC-CCGGCCUCUCa- -3'
miRNA:   3'- aCGGCAGU---------UGuGGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 107637 0.7 0.652375
Target:  5'- gGCUGUCAucuGCCGuCCAGCCaCUCaGGa -3'
miRNA:   3'- aCGGCAGUug-UGGC-GGUCGGaGAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 106634 0.67 0.828409
Target:  5'- uUGCCG-CAGCGCCugcugcgGCCGGCUggUCaGGg -3'
miRNA:   3'- -ACGGCaGUUGUGG-------CGGUCGGagAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 106490 0.66 0.845222
Target:  5'- cGCCGcCGugGCC-CCGGCCUacaUCa- -3'
miRNA:   3'- aCGGCaGUugUGGcGGUCGGAg--AGcc -5'
29084 5' -58.2 NC_006146.1 + 102572 0.7 0.662311
Target:  5'- gGCCGUCcuCGaCGCCAuCCUCUCGcGg -3'
miRNA:   3'- aCGGCAGuuGUgGCGGUcGGAGAGC-C- -5'
29084 5' -58.2 NC_006146.1 + 98445 0.67 0.795258
Target:  5'- -aCCGguuUCGGCGCCGCCcgggggccAGUCUCUgGGu -3'
miRNA:   3'- acGGC---AGUUGUGGCGG--------UCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 94506 0.73 0.459262
Target:  5'- cGCCGUCGGCGCCcCCGGUCcCUCc- -3'
miRNA:   3'- aCGGCAGUUGUGGcGGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 91832 0.66 0.860485
Target:  5'- aGCCGUCAucGCAUgCGuCCGgcGCCUgcggaCUCGGa -3'
miRNA:   3'- aCGGCAGU--UGUG-GC-GGU--CGGA-----GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 91783 0.67 0.829227
Target:  5'- gUGCCGUgcUGGCAcCCGCgGGCCUUaCGa -3'
miRNA:   3'- -ACGGCA--GUUGU-GGCGgUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 86052 0.66 0.867826
Target:  5'- -uCCGUCGGCuCCuCCAGCUUCU-GGa -3'
miRNA:   3'- acGGCAGUUGuGGcGGUCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 81757 0.66 0.860485
Target:  5'- cUGCgCGUugcaugagagCAugGCCGcCCGGUCUC-CGGg -3'
miRNA:   3'- -ACG-GCA----------GUugUGGC-GGUCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 76473 0.67 0.832482
Target:  5'- uUGCCcaguacaagacccugGUCGGC-CUGCCaAGCCUCaCGGc -3'
miRNA:   3'- -ACGG---------------CAGUUGuGGCGG-UCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 75800 0.66 0.867826
Target:  5'- gGgCGUCucggGCGCCGCCuucgaGGCC-CUgCGGg -3'
miRNA:   3'- aCgGCAGu---UGUGGCGG-----UCGGaGA-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.