miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 72613 0.68 0.768291
Target:  5'- cGCCcUCAGCcccACCGCCua-CUUUCGGg -3'
miRNA:   3'- aCGGcAGUUG---UGGCGGucgGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 71891 0.68 0.759061
Target:  5'- gGCCGUCAcgcggacccucCugCGCgCGGCCUCUgaccUGGg -3'
miRNA:   3'- aCGGCAGUu----------GugGCG-GUCGGAGA----GCC- -5'
29084 5' -58.2 NC_006146.1 + 65293 0.69 0.711486
Target:  5'- gGCUGUgGaccuggcuGCGCUGCCucuugcGGCCUCUCGa -3'
miRNA:   3'- aCGGCAgU--------UGUGGCGG------UCGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 62217 0.68 0.749725
Target:  5'- aGCCcu--GCGCCG-CAGCCUCUgGGc -3'
miRNA:   3'- aCGGcaguUGUGGCgGUCGGAGAgCC- -5'
29084 5' -58.2 NC_006146.1 + 62134 0.7 0.632464
Target:  5'- gGCCcUCAGaauuuCUGCCAGCCUCagGGa -3'
miRNA:   3'- aCGGcAGUUgu---GGCGGUCGGAGagCC- -5'
29084 5' -58.2 NC_006146.1 + 62096 0.69 0.721163
Target:  5'- aGCCGUggcggCAGgACUGCUcGCCUCggCGGg -3'
miRNA:   3'- aCGGCA-----GUUgUGGCGGuCGGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 58888 0.66 0.860485
Target:  5'- aGCCGUCuuCGCUGaCUGGucucCCUCUCuGGa -3'
miRNA:   3'- aCGGCAGuuGUGGC-GGUC----GGAGAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 58852 0.74 0.424037
Target:  5'- cGCCGUCAAgGCCGgCAGCCcCUUc- -3'
miRNA:   3'- aCGGCAGUUgUGGCgGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 56595 0.7 0.652375
Target:  5'- cGCCGagccCGCCGCCGGUCUcCUCGc -3'
miRNA:   3'- aCGGCaguuGUGGCGGUCGGA-GAGCc -5'
29084 5' -58.2 NC_006146.1 + 55703 0.67 0.812552
Target:  5'- cGCCGcCGGggggcucugccCGCCGCUGGCCUCcgCGu -3'
miRNA:   3'- aCGGCaGUU-----------GUGGCGGUCGGAGa-GCc -5'
29084 5' -58.2 NC_006146.1 + 53396 0.81 0.162176
Target:  5'- cUGCCGUUAGCcaggagaaugACCGCgAGUCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUG----------UGGCGgUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 52552 0.66 0.867826
Target:  5'- cGCCGagcgguagauguUCAcGCGcCCGCCGGCC-CUCa- -3'
miRNA:   3'- aCGGC------------AGU-UGU-GGCGGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 52415 0.71 0.582805
Target:  5'- gGCCGUCAAgACCG-UGGCCUCUg-- -3'
miRNA:   3'- aCGGCAGUUgUGGCgGUCGGAGAgcc -5'
29084 5' -58.2 NC_006146.1 + 50853 0.66 0.837313
Target:  5'- cGCag-CAGCGCCaCCAGUCUCcgcgCGGg -3'
miRNA:   3'- aCGgcaGUUGUGGcGGUCGGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 50133 0.67 0.795258
Target:  5'- cGCCaGggacaugaGGCGCCGCCAGCgCUCgUCGu -3'
miRNA:   3'- aCGG-Cag------UUGUGGCGGUCG-GAG-AGCc -5'
29084 5' -58.2 NC_006146.1 + 48868 0.67 0.803979
Target:  5'- aGCCGUCGgccuccagGCGCCagGCCugcGCCUCUUc- -3'
miRNA:   3'- aCGGCAGU--------UGUGG--CGGu--CGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 48098 0.69 0.701746
Target:  5'- gGCCGaCAGCGCgGCCucGGCCgcccgucucuucUCUUGGa -3'
miRNA:   3'- aCGGCaGUUGUGgCGG--UCGG------------AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 48021 0.67 0.829227
Target:  5'- gGCgGgggaGGCACgGCgGGCCggCUCGGg -3'
miRNA:   3'- aCGgCag--UUGUGgCGgUCGGa-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 47699 0.67 0.786397
Target:  5'- cUGCUGUC--CACCGCCcugugcucGGCC-CUCGa -3'
miRNA:   3'- -ACGGCAGuuGUGGCGG--------UCGGaGAGCc -5'
29084 5' -58.2 NC_006146.1 + 47532 0.66 0.852948
Target:  5'- gUGUCGggGGCGCCGCCucGGuCCUCcucgCGGc -3'
miRNA:   3'- -ACGGCagUUGUGGCGG--UC-GGAGa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.