miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 111575 1.09 0.002029
Target:  5'- aUGCCGUCAACACCGCCAGCCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUGUGGCGGUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 130925 0.69 0.721163
Target:  5'- gGCCG-CAGCAgCC-UCAGCCUCUCc- -3'
miRNA:   3'- aCGGCaGUUGU-GGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 43487 0.68 0.740291
Target:  5'- gGCCGUUGACACCGgcuCCGGCgg--CGGg -3'
miRNA:   3'- aCGGCAGUUGUGGC---GGUCGgagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 127200 0.66 0.867826
Target:  5'- cGCCaggaccUgGACGCCGUaguGGCCUuCUCGGa -3'
miRNA:   3'- aCGGc-----AgUUGUGGCGg--UCGGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 58852 0.74 0.424037
Target:  5'- cGCCGUCAAgGCCGgCAGCCcCUUc- -3'
miRNA:   3'- aCGGCAGUUgUGGCgGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 94506 0.73 0.459262
Target:  5'- cGCCGUCGGCGCCcCCGGUCcCUCc- -3'
miRNA:   3'- aCGGCAGUUGUGGcGGUCGGaGAGcc -5'
29084 5' -58.2 NC_006146.1 + 121903 0.71 0.553359
Target:  5'- aGCUGggCAACGCC-CCAGCCUCccaGGu -3'
miRNA:   3'- aCGGCa-GUUGUGGcGGUCGGAGag-CC- -5'
29084 5' -58.2 NC_006146.1 + 110412 0.71 0.572948
Target:  5'- cGCCGUCGggggagcugGCcCC-CCGGCCUCUCa- -3'
miRNA:   3'- aCGGCAGU---------UGuGGcGGUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 107637 0.7 0.652375
Target:  5'- gGCUGUCAucuGCCGuCCAGCCaCUCaGGa -3'
miRNA:   3'- aCGGCAGUug-UGGC-GGUCGGaGAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 65293 0.69 0.711486
Target:  5'- gGCUGUgGaccuggcuGCGCUGCCucuugcGGCCUCUCGa -3'
miRNA:   3'- aCGGCAgU--------UGUGGCGG------UCGGAGAGCc -5'
29084 5' -58.2 NC_006146.1 + 113876 0.69 0.682106
Target:  5'- aUGCCG-CAcucCACCGCCAccuCCUcCUCGGc -3'
miRNA:   3'- -ACGGCaGUu--GUGGCGGUc--GGA-GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 56595 0.7 0.652375
Target:  5'- cGCCGagccCGCCGCCGGUCUcCUCGc -3'
miRNA:   3'- aCGGCaguuGUGGCGGUCGGA-GAGCc -5'
29084 5' -58.2 NC_006146.1 + 53396 0.81 0.162176
Target:  5'- cUGCCGUUAGCcaggagaaugACCGCgAGUCUCUCGGc -3'
miRNA:   3'- -ACGGCAGUUG----------UGGCGgUCGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 130764 0.69 0.682106
Target:  5'- cGCCGcCcuguaccgcaagGACAUCGCgGGCCUCUCc- -3'
miRNA:   3'- aCGGCaG------------UUGUGGCGgUCGGAGAGcc -5'
29084 5' -58.2 NC_006146.1 + 127629 0.76 0.34351
Target:  5'- cUGCCGgaccUCcAgGCCGCCcuguGCCUCUCGGu -3'
miRNA:   3'- -ACGGC----AGuUgUGGCGGu---CGGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 33414 0.7 0.652375
Target:  5'- cGCC-UgGGCACCGCUGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGcAgUUGUGGCGGU-CGGa---GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 48098 0.69 0.701746
Target:  5'- gGCCGaCAGCGCgGCCucGGCCgcccgucucuucUCUUGGa -3'
miRNA:   3'- aCGGCaGUUGUGgCGG--UCGG------------AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 62096 0.69 0.721163
Target:  5'- aGCCGUggcggCAGgACUGCUcGCCUCggCGGg -3'
miRNA:   3'- aCGGCA-----GUUgUGGCGGuCGGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 131096 0.75 0.374364
Target:  5'- gGCCGUCAACgGCCGCCgucccagaAGCCgggagCUcCGGg -3'
miRNA:   3'- aCGGCAGUUG-UGGCGG--------UCGGa----GA-GCC- -5'
29084 5' -58.2 NC_006146.1 + 33169 0.73 0.486674
Target:  5'- gGCUGg--GCACCGCCGcGCCgccgCUCGGu -3'
miRNA:   3'- aCGGCaguUGUGGCGGU-CGGa---GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.