miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29084 5' -58.2 NC_006146.1 + 50853 0.66 0.837313
Target:  5'- cGCag-CAGCGCCaCCAGUCUCcgcgCGGg -3'
miRNA:   3'- aCGgcaGUUGUGGcGGUCGGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 81757 0.66 0.860485
Target:  5'- cUGCgCGUugcaugagagCAugGCCGcCCGGUCUC-CGGg -3'
miRNA:   3'- -ACG-GCA----------GUugUGGC-GGUCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 47532 0.66 0.852948
Target:  5'- gUGUCGggGGCGCCGCCucGGuCCUCcucgCGGc -3'
miRNA:   3'- -ACGGCagUUGUGGCGG--UC-GGAGa---GCC- -5'
29084 5' -58.2 NC_006146.1 + 106490 0.66 0.845222
Target:  5'- cGCCGcCGugGCC-CCGGCCUacaUCa- -3'
miRNA:   3'- aCGGCaGUugUGGcGGUCGGAg--AGcc -5'
29084 5' -58.2 NC_006146.1 + 23737 0.66 0.852948
Target:  5'- cGCCgGUCuGCGCCGCCGccgggucaacuGCCg--CGGc -3'
miRNA:   3'- aCGG-CAGuUGUGGCGGU-----------CGGagaGCC- -5'
29084 5' -58.2 NC_006146.1 + 166705 0.7 0.622505
Target:  5'- -aCCGUCAugAagccgguucCCGCCgAGCCcgUCUCGGg -3'
miRNA:   3'- acGGCAGUugU---------GGCGG-UCGG--AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 76473 0.67 0.832482
Target:  5'- uUGCCcaguacaagacccugGUCGGC-CUGCCaAGCCUCaCGGc -3'
miRNA:   3'- -ACGG---------------CAGUUGuGGCGG-UCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 91783 0.67 0.829227
Target:  5'- gUGCCGUgcUGGCAcCCGCgGGCCUUaCGa -3'
miRNA:   3'- -ACGGCA--GUUGU-GGCGgUCGGAGaGCc -5'
29084 5' -58.2 NC_006146.1 + 106634 0.67 0.828409
Target:  5'- uUGCCG-CAGCGCCugcugcgGCCGGCUggUCaGGg -3'
miRNA:   3'- -ACGGCaGUUGUGG-------CGGUCGGagAG-CC- -5'
29084 5' -58.2 NC_006146.1 + 41847 0.7 0.642423
Target:  5'- gGCUGUCuGCGCCGgCgucugGGCCcagCUCGGg -3'
miRNA:   3'- aCGGCAGuUGUGGCgG-----UCGGa--GAGCC- -5'
29084 5' -58.2 NC_006146.1 + 102572 0.7 0.662311
Target:  5'- gGCCGUCcuCGaCGCCAuCCUCUCGcGg -3'
miRNA:   3'- aCGGCAGuuGUgGCGGUcGGAGAGC-C- -5'
29084 5' -58.2 NC_006146.1 + 129616 0.7 0.662311
Target:  5'- cGCCGUCucCGUCGCCGGguCCUCcgCGGg -3'
miRNA:   3'- aCGGCAGuuGUGGCGGUC--GGAGa-GCC- -5'
29084 5' -58.2 NC_006146.1 + 39818 0.69 0.701746
Target:  5'- gGCCGUUGACGgcCCGgCGGCCUCggccgcacagUGGg -3'
miRNA:   3'- aCGGCAGUUGU--GGCgGUCGGAGa---------GCC- -5'
29084 5' -58.2 NC_006146.1 + 130750 0.68 0.72981
Target:  5'- cGCCGUCAACuCCagguaugGCCAGCCcccCUCc- -3'
miRNA:   3'- aCGGCAGUUGuGG-------CGGUCGGa--GAGcc -5'
29084 5' -58.2 NC_006146.1 + 42712 0.68 0.748786
Target:  5'- cGCCG-CGGCGCCccccuggGCC-GCCUCcCGGc -3'
miRNA:   3'- aCGGCaGUUGUGG-------CGGuCGGAGaGCC- -5'
29084 5' -58.2 NC_006146.1 + 168896 0.68 0.740291
Target:  5'- uUGCCGccccgCAGCgcgACUGUCAGCagguUCUCGGa -3'
miRNA:   3'- -ACGGCa----GUUG---UGGCGGUCGg---AGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 71891 0.68 0.759061
Target:  5'- gGCCGUCAcgcggacccucCugCGCgCGGCCUCUgaccUGGg -3'
miRNA:   3'- aCGGCAGUu----------GugGCG-GUCGGAGA----GCC- -5'
29084 5' -58.2 NC_006146.1 + 72613 0.68 0.768291
Target:  5'- cGCCcUCAGCcccACCGCCua-CUUUCGGg -3'
miRNA:   3'- aCGGcAGUUG---UGGCGGucgGAGAGCC- -5'
29084 5' -58.2 NC_006146.1 + 47699 0.67 0.786397
Target:  5'- cUGCUGUC--CACCGCCcugugcucGGCC-CUCGa -3'
miRNA:   3'- -ACGGCAGuuGUGGCGG--------UCGGaGAGCc -5'
29084 5' -58.2 NC_006146.1 + 25370 0.67 0.795258
Target:  5'- gUGuCCgGUCAACGCCGUCcGCCg--CGGc -3'
miRNA:   3'- -AC-GG-CAGUUGUGGCGGuCGGagaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.