Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 151486 | 0.66 | 0.993018 |
Target: 5'- uGGCUUCGAAGAuC-UGGCAccCGUGCu -3' miRNA: 3'- -CCGGAGCUUUUcGcACCGUu-GUACGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 24091 | 0.66 | 0.990027 |
Target: 5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3' miRNA: 3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 158308 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 155229 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152151 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149073 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 145995 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 142917 | 0.66 | 0.989489 |
Target: 5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3' miRNA: 3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 104737 | 0.66 | 0.989489 |
Target: 5'- uGGcCCUCGGucauGAGCacccUGGCAACA-GCu -3' miRNA: 3'- -CC-GGAGCUu---UUCGc---ACCGUUGUaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152688 | 0.66 | 0.990793 |
Target: 5'- aGGUCUCGAAGGggcccugagauGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGAGCUUUU-----------CgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 143717 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146795 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 155777 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149622 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 146544 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 143466 | 0.66 | 0.993018 |
Target: 5'- gGGCCcUGAGAuGgGUGGCugUGUGUAg -3' miRNA: 3'- -CCGGaGCUUUuCgCACCGuuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 40821 | 0.66 | 0.993018 |
Target: 5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3' miRNA: 3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 156029 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 152951 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 149873 | 0.66 | 0.991967 |
Target: 5'- gGGCCUCGGAGGGCcUGGagg---GCu -3' miRNA: 3'- -CCGGAGCUUUUCGcACCguuguaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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