miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 113098 1.12 0.005086
Target:  5'- cGGCCUCGAAAAGCGUGGCAACAUGCAg -3'
miRNA:   3'- -CCGGAGCUUUUCGCACCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 11633 0.79 0.506679
Target:  5'- gGGCCcCGAGGcccGCGUGGCGGCGuUGCAc -3'
miRNA:   3'- -CCGGaGCUUUu--CGCACCGUUGU-ACGU- -5'
29085 3' -51.5 NC_006146.1 + 112135 0.77 0.617217
Target:  5'- uGGCCUCGguGcugacauuggagguAGCGuUGGCGGCAUGUg -3'
miRNA:   3'- -CCGGAGCuuU--------------UCGC-ACCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 57766 0.76 0.641471
Target:  5'- aGCCUCGggGGGCGUgggagauuugaGGCAGCcgcccUGCAu -3'
miRNA:   3'- cCGGAGCuuUUCGCA-----------CCGUUGu----ACGU- -5'
29085 3' -51.5 NC_006146.1 + 64159 0.76 0.673027
Target:  5'- gGGCCUCGGAGucugccaggcugGGUGggGGCAGCAggaguUGCAa -3'
miRNA:   3'- -CCGGAGCUUU------------UCGCa-CCGUUGU-----ACGU- -5'
29085 3' -51.5 NC_006146.1 + 130791 0.74 0.754895
Target:  5'- gGGCCUCuccAAAAGCGUGaGCGAgcUGCAg -3'
miRNA:   3'- -CCGGAGc--UUUUCGCAC-CGUUguACGU- -5'
29085 3' -51.5 NC_006146.1 + 90987 0.73 0.797115
Target:  5'- gGGUUUCGGGAAGCccccGUGGCAuaacccgcuuuagagGCAUGCu -3'
miRNA:   3'- -CCGGAGCUUUUCG----CACCGU---------------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 125294 0.73 0.829421
Target:  5'- aGGCCagcacUCuGAAGGGCGUGGUAaauuucaucugGCAUGCc -3'
miRNA:   3'- -CCGG-----AG-CUUUUCGCACCGU-----------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 53187 0.73 0.829421
Target:  5'- cGGCCUCGGccccGGCcuuggggGGCGGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuu--UCGca-----CCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 13999 0.73 0.832865
Target:  5'- aGGCCUCGGccgggcuggugcuggAAGGCGgagGGCAGgGaGCAg -3'
miRNA:   3'- -CCGGAGCU---------------UUUCGCa--CCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 48038 0.72 0.846327
Target:  5'- gGGCCggcUCGGGucguccAGCGccccgGGCAGCGUGCGg -3'
miRNA:   3'- -CCGG---AGCUUu-----UCGCa----CCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 74480 0.71 0.874641
Target:  5'- uGGCCUUGAGcGGCGcuguguucaggagcUGGCAcaucuucGCGUGCu -3'
miRNA:   3'- -CCGGAGCUUuUCGC--------------ACCGU-------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 49494 0.71 0.891877
Target:  5'- cGGCCagGGGcGGCGUGGCAucuggAUcgGCGg -3'
miRNA:   3'- -CCGGagCUUuUCGCACCGU-----UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 115355 0.71 0.898651
Target:  5'- aGGCCUuccUGGccGGCGUGGCGGCGgaGCu -3'
miRNA:   3'- -CCGGA---GCUuuUCGCACCGUUGUa-CGu -5'
29085 3' -51.5 NC_006146.1 + 64243 0.71 0.90518
Target:  5'- gGGCCggggCGGGAggGGCGUGGCucgcuccgAACAUGgGu -3'
miRNA:   3'- -CCGGa---GCUUU--UCGCACCG--------UUGUACgU- -5'
29085 3' -51.5 NC_006146.1 + 15417 0.71 0.90518
Target:  5'- uGGCCUCaGAGGGGC-UGGCccGGC-UGCAg -3'
miRNA:   3'- -CCGGAG-CUUUUCGcACCG--UUGuACGU- -5'
29085 3' -51.5 NC_006146.1 + 32024 0.71 0.907721
Target:  5'- gGGCCUCGGgacGAGGCGcUGGCccaggucaugacccgGGCGUGgCGa -3'
miRNA:   3'- -CCGGAGCU---UUUCGC-ACCG---------------UUGUAC-GU- -5'
29085 3' -51.5 NC_006146.1 + 44119 0.7 0.923263
Target:  5'- cGGCUgcccggCGAGGAGgGggGGCAggACGUGCGc -3'
miRNA:   3'- -CCGGa-----GCUUUUCgCa-CCGU--UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 128275 0.7 0.928243
Target:  5'- cGGCCgcu---GGCGUGGCAcgucagcACGUGCu -3'
miRNA:   3'- -CCGGagcuuuUCGCACCGU-------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 127836 0.7 0.928784
Target:  5'- aGCCUCcccuGGAGGGUGggcuugGGCAGCcgGCGu -3'
miRNA:   3'- cCGGAG----CUUUUCGCa-----CCGUUGuaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.