miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 10675 0.67 0.9847
Target:  5'- aGGCC-CGggGcgauacccGCG-GGCAuCAUGCAg -3'
miRNA:   3'- -CCGGaGCuuUu-------CGCaCCGUuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 11633 0.79 0.506679
Target:  5'- gGGCCcCGAGGcccGCGUGGCGGCGuUGCAc -3'
miRNA:   3'- -CCGGaGCUUUu--CGCACCGUUGU-ACGU- -5'
29085 3' -51.5 NC_006146.1 + 13999 0.73 0.832865
Target:  5'- aGGCCUCGGccgggcuggugcuggAAGGCGgagGGCAGgGaGCAg -3'
miRNA:   3'- -CCGGAGCU---------------UUUCGCa--CCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 15417 0.71 0.90518
Target:  5'- uGGCCUCaGAGGGGC-UGGCccGGC-UGCAg -3'
miRNA:   3'- -CCGGAG-CUUUUCGcACCG--UUGuACGU- -5'
29085 3' -51.5 NC_006146.1 + 24091 0.66 0.990027
Target:  5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3'
miRNA:   3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5'
29085 3' -51.5 NC_006146.1 + 32024 0.71 0.907721
Target:  5'- gGGCCUCGGgacGAGGCGcUGGCccaggucaugacccgGGCGUGgCGa -3'
miRNA:   3'- -CCGGAGCU---UUUCGC-ACCG---------------UUGUAC-GU- -5'
29085 3' -51.5 NC_006146.1 + 39283 0.7 0.934052
Target:  5'- cGGaCUCGAGAcGGCagGUGGCAGCAgagGCc -3'
miRNA:   3'- -CCgGAGCUUU-UCG--CACCGUUGUa--CGu -5'
29085 3' -51.5 NC_006146.1 + 39670 0.69 0.948341
Target:  5'- uGGCCUUGGAGgcGGCG-GGCuccugGGCcUGCAg -3'
miRNA:   3'- -CCGGAGCUUU--UCGCaCCG-----UUGuACGU- -5'
29085 3' -51.5 NC_006146.1 + 40821 0.66 0.993018
Target:  5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3'
miRNA:   3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5'
29085 3' -51.5 NC_006146.1 + 41065 0.68 0.973261
Target:  5'- gGGCucgCUCGGAcggGGGCGUGGCGggugggccGCggGCGa -3'
miRNA:   3'- -CCG---GAGCUU---UUCGCACCGU--------UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 41084 0.66 0.986451
Target:  5'- aGGCCagGGAcAGCGaggGGagccaGGCGUGCAg -3'
miRNA:   3'- -CCGGagCUUuUCGCa--CCg----UUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 44119 0.7 0.923263
Target:  5'- cGGCUgcccggCGAGGAGgGggGGCAggACGUGCGc -3'
miRNA:   3'- -CCGGa-----GCUUUUCgCa-CCGU--UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 44384 0.66 0.993018
Target:  5'- cGCC-CGggGGGCGUGuGgGGCcggGCAc -3'
miRNA:   3'- cCGGaGCuuUUCGCAC-CgUUGua-CGU- -5'
29085 3' -51.5 NC_006146.1 + 45169 0.66 0.993018
Target:  5'- aGGCCUCGGAAucGGC--GGCGGCGc--- -3'
miRNA:   3'- -CCGGAGCUUU--UCGcaCCGUUGUacgu -5'
29085 3' -51.5 NC_006146.1 + 46086 0.69 0.943828
Target:  5'- gGGCCUCGggGGcgaagcaccgucGCGcGaGCAGCAgcagGCAu -3'
miRNA:   3'- -CCGGAGCuuUU------------CGCaC-CGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 48001 0.66 0.991967
Target:  5'- uGGCUgguggCGGGAGGCuUGGCGGgGgagGCAc -3'
miRNA:   3'- -CCGGa----GCUUUUCGcACCGUUgUa--CGU- -5'
29085 3' -51.5 NC_006146.1 + 48038 0.72 0.846327
Target:  5'- gGGCCggcUCGGGucguccAGCGccccgGGCAGCGUGCGg -3'
miRNA:   3'- -CCGG---AGCUUu-----UCGCa----CCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 49494 0.71 0.891877
Target:  5'- cGGCCagGGGcGGCGUGGCAucuggAUcgGCGg -3'
miRNA:   3'- -CCGGagCUUuUCGCACCGU-----UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 50713 0.69 0.943828
Target:  5'- aGGCCUgaaagccggCGuuGAGCGggGGCGACGggGCGu -3'
miRNA:   3'- -CCGGA---------GCuuUUCGCa-CCGUUGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 51821 0.68 0.967282
Target:  5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3'
miRNA:   3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.