Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 3' | -51.5 | NC_006146.1 | + | 10675 | 0.67 | 0.9847 |
Target: 5'- aGGCC-CGggGcgauacccGCG-GGCAuCAUGCAg -3' miRNA: 3'- -CCGGaGCuuUu-------CGCaCCGUuGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 11633 | 0.79 | 0.506679 |
Target: 5'- gGGCCcCGAGGcccGCGUGGCGGCGuUGCAc -3' miRNA: 3'- -CCGGaGCUUUu--CGCACCGUUGU-ACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 13999 | 0.73 | 0.832865 |
Target: 5'- aGGCCUCGGccgggcuggugcuggAAGGCGgagGGCAGgGaGCAg -3' miRNA: 3'- -CCGGAGCU---------------UUUCGCa--CCGUUgUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 15417 | 0.71 | 0.90518 |
Target: 5'- uGGCCUCaGAGGGGC-UGGCccGGC-UGCAg -3' miRNA: 3'- -CCGGAG-CUUUUCGcACCG--UUGuACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 24091 | 0.66 | 0.990027 |
Target: 5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3' miRNA: 3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 32024 | 0.71 | 0.907721 |
Target: 5'- gGGCCUCGGgacGAGGCGcUGGCccaggucaugacccgGGCGUGgCGa -3' miRNA: 3'- -CCGGAGCU---UUUCGC-ACCG---------------UUGUAC-GU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 39283 | 0.7 | 0.934052 |
Target: 5'- cGGaCUCGAGAcGGCagGUGGCAGCAgagGCc -3' miRNA: 3'- -CCgGAGCUUU-UCG--CACCGUUGUa--CGu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 39670 | 0.69 | 0.948341 |
Target: 5'- uGGCCUUGGAGgcGGCG-GGCuccugGGCcUGCAg -3' miRNA: 3'- -CCGGAGCUUU--UCGCaCCG-----UUGuACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 40821 | 0.66 | 0.993018 |
Target: 5'- uGGCCUUGGccauGAGCuUGGUAAgGgGCAg -3' miRNA: 3'- -CCGGAGCUu---UUCGcACCGUUgUaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 41065 | 0.68 | 0.973261 |
Target: 5'- gGGCucgCUCGGAcggGGGCGUGGCGggugggccGCggGCGa -3' miRNA: 3'- -CCG---GAGCUU---UUCGCACCGU--------UGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 41084 | 0.66 | 0.986451 |
Target: 5'- aGGCCagGGAcAGCGaggGGagccaGGCGUGCAg -3' miRNA: 3'- -CCGGagCUUuUCGCa--CCg----UUGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 44119 | 0.7 | 0.923263 |
Target: 5'- cGGCUgcccggCGAGGAGgGggGGCAggACGUGCGc -3' miRNA: 3'- -CCGGa-----GCUUUUCgCa-CCGU--UGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 44384 | 0.66 | 0.993018 |
Target: 5'- cGCC-CGggGGGCGUGuGgGGCcggGCAc -3' miRNA: 3'- cCGGaGCuuUUCGCAC-CgUUGua-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 45169 | 0.66 | 0.993018 |
Target: 5'- aGGCCUCGGAAucGGC--GGCGGCGc--- -3' miRNA: 3'- -CCGGAGCUUU--UCGcaCCGUUGUacgu -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 46086 | 0.69 | 0.943828 |
Target: 5'- gGGCCUCGggGGcgaagcaccgucGCGcGaGCAGCAgcagGCAu -3' miRNA: 3'- -CCGGAGCuuUU------------CGCaC-CGUUGUa---CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 48001 | 0.66 | 0.991967 |
Target: 5'- uGGCUgguggCGGGAGGCuUGGCGGgGgagGCAc -3' miRNA: 3'- -CCGGa----GCUUUUCGcACCGUUgUa--CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 48038 | 0.72 | 0.846327 |
Target: 5'- gGGCCggcUCGGGucguccAGCGccccgGGCAGCGUGCGg -3' miRNA: 3'- -CCGG---AGCUUu-----UCGCa----CCGUUGUACGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 49494 | 0.71 | 0.891877 |
Target: 5'- cGGCCagGGGcGGCGUGGCAucuggAUcgGCGg -3' miRNA: 3'- -CCGGagCUUuUCGCACCGU-----UGuaCGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 50713 | 0.69 | 0.943828 |
Target: 5'- aGGCCUgaaagccggCGuuGAGCGggGGCGACGggGCGu -3' miRNA: 3'- -CCGGA---------GCuuUUCGCa-CCGUUGUa-CGU- -5' |
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29085 | 3' | -51.5 | NC_006146.1 | + | 51821 | 0.68 | 0.967282 |
Target: 5'- cGGCCuccUCGGGAAGCGccggaggugGGCuGCGguUGCAg -3' miRNA: 3'- -CCGG---AGCUUUUCGCa--------CCGuUGU--ACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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