miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 113098 1.12 0.005086
Target:  5'- cGGCCUCGAAAAGCGUGGCAACAUGCAg -3'
miRNA:   3'- -CCGGAGCUUUUCGCACCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 56784 0.67 0.980686
Target:  5'- aGGCCuccUCGguGAGCGcGGCGGCcgucugGCGg -3'
miRNA:   3'- -CCGG---AGCuuUUCGCaCCGUUGua----CGU- -5'
29085 3' -51.5 NC_006146.1 + 146010 0.67 0.982781
Target:  5'- uGGCCcacCGAGGGGCaGgggGGCAGCuccugGCAc -3'
miRNA:   3'- -CCGGa--GCUUUUCG-Ca--CCGUUGua---CGU- -5'
29085 3' -51.5 NC_006146.1 + 151486 0.66 0.993018
Target:  5'- uGGCUUCGAAGAuC-UGGCAccCGUGCu -3'
miRNA:   3'- -CCGGAGCUUUUcGcACCGUu-GUACGu -5'
29085 3' -51.5 NC_006146.1 + 125294 0.73 0.829421
Target:  5'- aGGCCagcacUCuGAAGGGCGUGGUAaauuucaucugGCAUGCc -3'
miRNA:   3'- -CCGG-----AG-CUUUUCGCACCGU-----------UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 48038 0.72 0.846327
Target:  5'- gGGCCggcUCGGGucguccAGCGccccgGGCAGCGUGCGg -3'
miRNA:   3'- -CCGG---AGCUUu-----UCGCa----CCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 39283 0.7 0.934052
Target:  5'- cGGaCUCGAGAcGGCagGUGGCAGCAgagGCc -3'
miRNA:   3'- -CCgGAGCUUU-UCG--CACCGUUGUa--CGu -5'
29085 3' -51.5 NC_006146.1 + 56841 0.7 0.934052
Target:  5'- cGGCCUCuGGcGGCGggGGCGGCA-GCu -3'
miRNA:   3'- -CCGGAGcUUuUCGCa-CCGUUGUaCGu -5'
29085 3' -51.5 NC_006146.1 + 56346 0.69 0.952607
Target:  5'- aGGCCgccCGGAgcagguaguAGGCGUGGUGGCGgaGCAc -3'
miRNA:   3'- -CCGGa--GCUU---------UUCGCACCGUUGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 55920 0.67 0.978407
Target:  5'- uGGCCUUGAuguccGCGgccgugGGCugcuGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuuu--CGCa-----CCGu---UGUACGu -5'
29085 3' -51.5 NC_006146.1 + 41065 0.68 0.973261
Target:  5'- gGGCucgCUCGGAcggGGGCGUGGCGggugggccGCggGCGa -3'
miRNA:   3'- -CCG---GAGCUU---UUCGCACCGU--------UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 46086 0.69 0.943828
Target:  5'- gGGCCUCGggGGcgaagcaccgucGCGcGaGCAGCAgcagGCAu -3'
miRNA:   3'- -CCGGAGCuuUU------------CGCaC-CGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 112135 0.77 0.617217
Target:  5'- uGGCCUCGguGcugacauuggagguAGCGuUGGCGGCAUGUg -3'
miRNA:   3'- -CCGGAGCuuU--------------UCGC-ACCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 66306 0.68 0.973261
Target:  5'- cGGCCaUCGucGGAGaCGUGGUAGCAgaagGUu -3'
miRNA:   3'- -CCGG-AGCu-UUUC-GCACCGUUGUa---CGu -5'
29085 3' -51.5 NC_006146.1 + 130791 0.74 0.754895
Target:  5'- gGGCCUCuccAAAAGCGUGaGCGAgcUGCAg -3'
miRNA:   3'- -CCGGAGc--UUUUCGCAC-CGUUguACGU- -5'
29085 3' -51.5 NC_006146.1 + 132973 0.69 0.943828
Target:  5'- gGGuCCUCGggGGGCGgUGGaGACcgcggGUGCGg -3'
miRNA:   3'- -CC-GGAGCuuUUCGC-ACCgUUG-----UACGU- -5'
29085 3' -51.5 NC_006146.1 + 52236 0.67 0.975935
Target:  5'- aGGCCUCGGgcagAAAGUagagGUGGaCGcACGUGUAc -3'
miRNA:   3'- -CCGGAGCU----UUUCG----CACC-GU-UGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 85602 0.67 0.982781
Target:  5'- cGCCUCG-GAAGC-UGGCAcCGggGCAa -3'
miRNA:   3'- cCGGAGCuUUUCGcACCGUuGUa-CGU- -5'
29085 3' -51.5 NC_006146.1 + 53187 0.73 0.829421
Target:  5'- cGGCCUCGGccccGGCcuuggggGGCGGCGUGCc -3'
miRNA:   3'- -CCGGAGCUuu--UCGca-----CCGUUGUACGu -5'
29085 3' -51.5 NC_006146.1 + 49494 0.71 0.891877
Target:  5'- cGGCCagGGGcGGCGUGGCAucuggAUcgGCGg -3'
miRNA:   3'- -CCGGagCUUuUCGCACCGU-----UGuaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.