miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 3' -51.5 NC_006146.1 + 24091 0.66 0.990027
Target:  5'- cGGCCUCGccugggacgcgggucGAGGGCGgcUGGCAcCggGCc -3'
miRNA:   3'- -CCGGAGC---------------UUUUCGC--ACCGUuGuaCGu -5'
29085 3' -51.5 NC_006146.1 + 124132 0.66 0.989489
Target:  5'- uGGCUgugCGGu-GGCGcguuUGGCAGCAUGg- -3'
miRNA:   3'- -CCGGa--GCUuuUCGC----ACCGUUGUACgu -5'
29085 3' -51.5 NC_006146.1 + 158308 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 104737 0.66 0.989489
Target:  5'- uGGcCCUCGGucauGAGCacccUGGCAACA-GCu -3'
miRNA:   3'- -CC-GGAGCUu---UUCGc---ACCGUUGUaCGu -5'
29085 3' -51.5 NC_006146.1 + 142917 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 145995 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 149073 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 155229 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 152151 0.66 0.989489
Target:  5'- aGGCCUCGAGggccggguucuGGGCuuGUGGgGACAcauggGCu -3'
miRNA:   3'- -CCGGAGCUU-----------UUCG--CACCgUUGUa----CGu -5'
29085 3' -51.5 NC_006146.1 + 163616 0.66 0.988044
Target:  5'- aGGCCUcucccCGGAAGGCGUGG-GGCAg--- -3'
miRNA:   3'- -CCGGA-----GCUUUUCGCACCgUUGUacgu -5'
29085 3' -51.5 NC_006146.1 + 170579 0.66 0.988044
Target:  5'- uGGCCggGAGAaugacagcugGGCGUGGCgAGCGcGCc -3'
miRNA:   3'- -CCGGagCUUU----------UCGCACCG-UUGUaCGu -5'
29085 3' -51.5 NC_006146.1 + 72138 0.66 0.988044
Target:  5'- aGGCauuccUGAAAGGCGUG-CAAgAUGCGg -3'
miRNA:   3'- -CCGga---GCUUUUCGCACcGUUgUACGU- -5'
29085 3' -51.5 NC_006146.1 + 57017 0.66 0.988044
Target:  5'- uGGCCgagGAGGAG-GUGGCGGuggaGUGCGg -3'
miRNA:   3'- -CCGGag-CUUUUCgCACCGUUg---UACGU- -5'
29085 3' -51.5 NC_006146.1 + 130266 0.66 0.988044
Target:  5'- gGGCCaccaugcuaUCGGguaacgcgggaGAAGCaGcGGCGGCAUGCGg -3'
miRNA:   3'- -CCGG---------AGCU-----------UUUCG-CaCCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 169519 0.66 0.986451
Target:  5'- cGGCaaCGAuGAGCa--GCAACAUGCAg -3'
miRNA:   3'- -CCGgaGCUuUUCGcacCGUUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 41084 0.66 0.986451
Target:  5'- aGGCCagGGAcAGCGaggGGagccaGGCGUGCAg -3'
miRNA:   3'- -CCGGagCUUuUCGCa--CCg----UUGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 61794 0.66 0.986451
Target:  5'- aGCCUCGuuacAGAAGUG-GGCGcGCcgGCAc -3'
miRNA:   3'- cCGGAGC----UUUUCGCaCCGU-UGuaCGU- -5'
29085 3' -51.5 NC_006146.1 + 65043 0.67 0.984882
Target:  5'- gGGCCcacugCGAGGAGCGgcacugcgucuacucGGCGGCGcgggGCAg -3'
miRNA:   3'- -CCGGa----GCUUUUCGCa--------------CCGUUGUa---CGU- -5'
29085 3' -51.5 NC_006146.1 + 10675 0.67 0.9847
Target:  5'- aGGCC-CGggGcgauacccGCG-GGCAuCAUGCAg -3'
miRNA:   3'- -CCGGaGCuuUu-------CGCaCCGUuGUACGU- -5'
29085 3' -51.5 NC_006146.1 + 85602 0.67 0.982781
Target:  5'- cGCCUCG-GAAGC-UGGCAcCGggGCAa -3'
miRNA:   3'- cCGGAGCuUUUCGcACCGUuGUa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.