miRNA display CGI


Results 101 - 120 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 116176 0.67 0.809546
Target:  5'- --uGAGUCUCCCcucggcCGCCCugaCCCG-GGCc -3'
miRNA:   3'- gagUUUAGAGGGu-----GCGGG---GGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 102305 0.67 0.809546
Target:  5'- -gCAGAUCgCCCACcuGCaCgCCCgGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGGUG--CG-G-GGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 77268 0.67 0.809546
Target:  5'- cCUCAAcGUCUUCUuCGgCCUCCGGGGa -3'
miRNA:   3'- -GAGUU-UAGAGGGuGCgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 116415 0.67 0.800907
Target:  5'- --gGAGUCUCCUcccacgACGCCaUCCUGAGGa -3'
miRNA:   3'- gagUUUAGAGGG------UGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 117556 0.67 0.800907
Target:  5'- -cCAAGaC-CUCACGCCgCCCCGcGGCc -3'
miRNA:   3'- gaGUUUaGaGGGUGCGG-GGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 125946 0.67 0.799162
Target:  5'- gUCGAGUCccccggggccucCCCGCGCCCCUggccacgaGAGGUu -3'
miRNA:   3'- gAGUUUAGa-----------GGGUGCGGGGGg-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 127356 0.67 0.815502
Target:  5'- -cCGcGUCUCCUacugcuucuugcgcGCGCCCCUCgugGAGGUg -3'
miRNA:   3'- gaGUuUAGAGGG--------------UGCGGGGGG---CUCCG- -5'
29085 5' -58 NC_006146.1 + 119082 0.67 0.818032
Target:  5'- --------cUCCACGCCgCCCCGGGGa -3'
miRNA:   3'- gaguuuagaGGGUGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 170627 0.67 0.834515
Target:  5'- -cCGGGUCuUCCCGgGCUCCCCcucacGGGUg -3'
miRNA:   3'- gaGUUUAG-AGGGUgCGGGGGGc----UCCG- -5'
29085 5' -58 NC_006146.1 + 29322 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32990 0.67 0.825532
Target:  5'- -aCAAAUUUCagugccgCCGCuaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAGAG-------GGUGcgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 52898 0.67 0.826357
Target:  5'- -cCGAG-C-CCCGCauggucugcgugGCCCCCCGGGGg -3'
miRNA:   3'- gaGUUUaGaGGGUG------------CGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 129399 0.67 0.834515
Target:  5'- gUCAGccgggcgucGUC-CCCGCGCaCCCCaAGGCc -3'
miRNA:   3'- gAGUU---------UAGaGGGUGCGgGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 160988 0.66 0.879567
Target:  5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3'
miRNA:   3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5'
29085 5' -58 NC_006146.1 + 126122 0.66 0.842497
Target:  5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3'
miRNA:   3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 42700 0.66 0.857912
Target:  5'- ----cGUCUggCCCggcgccgcgGCGCCCCCCuGGGCc -3'
miRNA:   3'- gaguuUAGA--GGG---------UGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 20169 0.66 0.849527
Target:  5'- --gAGAUCcCUCGCcucuuugcagaggGCCCCCgGGGGCg -3'
miRNA:   3'- gagUUUAGaGGGUG-------------CGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 40406 0.66 0.857912
Target:  5'- ------cCUCCCGCgggggcaaaguaGCCaCCCGGGGCg -3'
miRNA:   3'- gaguuuaGAGGGUG------------CGGgGGGCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.