miRNA display CGI


Results 101 - 120 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 2303 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 1371 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 135951 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32121 0.69 0.698133
Target:  5'- -gCAGGggUgCCACGUCaCCCCGGGGUg -3'
miRNA:   3'- gaGUUUagAgGGUGCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 7278 0.71 0.578995
Target:  5'- --aAAAUCcugcCCCACGCCUUCCGGGGa -3'
miRNA:   3'- gagUUUAGa---GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 113084 0.71 0.592853
Target:  5'- aCUCAucAAUCaauuuggugaggagCUCGCGCUCCCCGGGGg -3'
miRNA:   3'- -GAGU--UUAGa-------------GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 10005 0.69 0.69519
Target:  5'- -aCGGuUUUgCCACGCCCauuuuaacauaaaaCCCGGGGCa -3'
miRNA:   3'- gaGUUuAGAgGGUGCGGG--------------GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 54548 0.7 0.628688
Target:  5'- uUgAGAUCUCCgAucucCGCCCCaCCGuGGGCa -3'
miRNA:   3'- gAgUUUAGAGGgU----GCGGGG-GGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 122318 0.69 0.707909
Target:  5'- uUCuggcCUCCC-UGaCCCCCGAGGCc -3'
miRNA:   3'- gAGuuuaGAGGGuGCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 373 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 122836 0.68 0.783203
Target:  5'- -gCGAGUacguggaCCgCACGCUgCCCGGGGCg -3'
miRNA:   3'- gaGUUUAga-----GG-GUGCGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 103415 0.68 0.783203
Target:  5'- gUCGug-CUCCCcuCGCUCCuggaCCGGGGCu -3'
miRNA:   3'- gAGUuuaGAGGGu-GCGGGG----GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 36200 0.68 0.783203
Target:  5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3'
miRNA:   3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 116641 0.68 0.774154
Target:  5'- uCUCGGaggacGUUUCCCGCcugaccgggGCCgCCCaGAGGCu -3'
miRNA:   3'- -GAGUU-----UAGAGGGUG---------CGGgGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 65912 0.68 0.764984
Target:  5'- gUUGAguGUCUCCCcagaGCCCCCuCGGGaGCc -3'
miRNA:   3'- gAGUU--UAGAGGGug--CGGGGG-GCUC-CG- -5'
29085 5' -58 NC_006146.1 + 2236 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 3168 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 33185 0.69 0.688305
Target:  5'- -cCGGGUaggCCCGgGCaCCCCCGGGGg -3'
miRNA:   3'- gaGUUUAga-GGGUgCG-GGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 1304 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.