miRNA display CGI


Results 121 - 140 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 37916 0.78 0.247712
Target:  5'- aUCAccgcaccgcGGUCUCCaC-CGCCCCCCGAGGa -3'
miRNA:   3'- gAGU---------UUAGAGG-GuGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 42357 0.76 0.325705
Target:  5'- gCUCcaGGAUCUCCCGCGCCgCCagggugggcgaGGGGCg -3'
miRNA:   3'- -GAG--UUUAGAGGGUGCGGgGGg----------CUCCG- -5'
29085 5' -58 NC_006146.1 + 1154 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 2086 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 1371 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 2303 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 16019 0.68 0.746316
Target:  5'- -gCGAGg--CCC-UGCCCCCCGAcgGGCu -3'
miRNA:   3'- gaGUUUagaGGGuGCGGGGGGCU--CCG- -5'
29085 5' -58 NC_006146.1 + 75796 0.68 0.746316
Target:  5'- aCUCGGgcGUCUCggGCGCCgCCUuCGAGGCc -3'
miRNA:   3'- -GAGUU--UAGAGggUGCGG-GGG-GCUCCG- -5'
29085 5' -58 NC_006146.1 + 117088 0.68 0.740639
Target:  5'- -cCGAcUCUUCCA-GCCCCCCGcuauggacgccgcgcGGGCc -3'
miRNA:   3'- gaGUUuAGAGGGUgCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 107635 0.68 0.736836
Target:  5'- aUgGAAUggCCCAgguagaGCCCCCCgGAGGCc -3'
miRNA:   3'- gAgUUUAgaGGGUg-----CGGGGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 14898 0.68 0.736836
Target:  5'- gUCu--UCUCgaCCGUGCCCCCgGAGGUg -3'
miRNA:   3'- gAGuuuAGAG--GGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 107805 0.69 0.731105
Target:  5'- --aGGGUCUCCUucaGCGaggccaccgcauguuCCCCCCGAGaGCa -3'
miRNA:   3'- gagUUUAGAGGG---UGC---------------GGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 165951 0.69 0.727269
Target:  5'- uCUCGuggC-CCCugG-UCCCCGGGGCa -3'
miRNA:   3'- -GAGUuuaGaGGGugCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 3168 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 2236 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 1304 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 373 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 122318 0.69 0.707909
Target:  5'- uUCuggcCUCCC-UGaCCCCCGAGGCc -3'
miRNA:   3'- gAGuuuaGAGGGuGCgGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 99398 0.69 0.698133
Target:  5'- -cCGcuUCUCCaACGCCuCCCCcAGGCa -3'
miRNA:   3'- gaGUuuAGAGGgUGCGG-GGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 3235 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.