miRNA display CGI


Results 61 - 80 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 121925 0.68 0.755702
Target:  5'- aUCAGcUCUCCCagACGCUcauCCCCGGGaaGCu -3'
miRNA:   3'- gAGUUuAGAGGG--UGCGG---GGGGCUC--CG- -5'
29085 5' -58 NC_006146.1 + 44720 0.68 0.755702
Target:  5'- aUCAGGUgcCUgCCCACugGCCCCCCuuGAuGGCu -3'
miRNA:   3'- gAGUUUA--GA-GGGUG--CGGGGGG--CU-CCG- -5'
29085 5' -58 NC_006146.1 + 20301 0.68 0.755702
Target:  5'- --aAGAUCgCCCACaUCCCCUGcAGGCg -3'
miRNA:   3'- gagUUUAGaGGGUGcGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 115139 0.68 0.746316
Target:  5'- cCUCGcugC-CCCugGCCCgCCGccGGGCg -3'
miRNA:   3'- -GAGUuuaGaGGGugCGGGgGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 53403 0.68 0.746316
Target:  5'- ------aUUCCCugGCCUCCagGAGGCc -3'
miRNA:   3'- gaguuuaGAGGGugCGGGGGg-CUCCG- -5'
29085 5' -58 NC_006146.1 + 16019 0.68 0.746316
Target:  5'- -gCGAGg--CCC-UGCCCCCCGAcgGGCu -3'
miRNA:   3'- gaGUUUagaGGGuGCGGGGGGCU--CCG- -5'
29085 5' -58 NC_006146.1 + 116641 0.68 0.774154
Target:  5'- uCUCGGaggacGUUUCCCGCcugaccgggGCCgCCCaGAGGCu -3'
miRNA:   3'- -GAGUU-----UAGAGGGUG---------CGGgGGG-CUCCG- -5'
29085 5' -58 NC_006146.1 + 36200 0.68 0.783203
Target:  5'- uCUCAGA-CaCCUggGCUCCCCGGGaGCg -3'
miRNA:   3'- -GAGUUUaGaGGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 77268 0.67 0.809546
Target:  5'- cCUCAAcGUCUUCUuCGgCCUCCGGGGa -3'
miRNA:   3'- -GAGUU-UAGAGGGuGCgGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 116415 0.67 0.800907
Target:  5'- --gGAGUCUCCUcccacgACGCCaUCCUGAGGa -3'
miRNA:   3'- gagUUUAGAGGG------UGCGG-GGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 117556 0.67 0.800907
Target:  5'- -cCAAGaC-CUCACGCCgCCCCGcGGCc -3'
miRNA:   3'- gaGUUUaGaGGGUGCGG-GGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 125946 0.67 0.799162
Target:  5'- gUCGAGUCccccggggccucCCCGCGCCCCUggccacgaGAGGUu -3'
miRNA:   3'- gAGUUUAGa-----------GGGUGCGGGGGg-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 49504 0.67 0.792124
Target:  5'- -gCAGAcUCUCCCggACGUUgaggCCCGAGGCg -3'
miRNA:   3'- gaGUUU-AGAGGG--UGCGGg---GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 122836 0.68 0.783203
Target:  5'- -gCGAGUacguggaCCgCACGCUgCCCGGGGCg -3'
miRNA:   3'- gaGUUUAga-----GG-GUGCGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 103415 0.68 0.783203
Target:  5'- gUCGug-CUCCCcuCGCUCCuggaCCGGGGCu -3'
miRNA:   3'- gAGUuuaGAGGGu-GCGGGG----GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 160988 0.66 0.879567
Target:  5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3'
miRNA:   3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5'
29085 5' -58 NC_006146.1 + 66854 0.79 0.22007
Target:  5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3'
miRNA:   3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 80270 0.78 0.265641
Target:  5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 150713 0.78 0.271846
Target:  5'- ------cCUCCUGCGCCCCCgGGGGCc -3'
miRNA:   3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.