miRNA display CGI


Results 141 - 160 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 155740 0.69 0.698133
Target:  5'- uUCAGcgCUUCCacgGCGUCgCCCGAGGa -3'
miRNA:   3'- gAGUUuaGAGGG---UGCGGgGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 17010 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 20088 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 23166 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 26244 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 29322 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 32716 0.67 0.809546
Target:  5'- gUCAAuUCcCCCAUGCCCUCaUGuauGGCa -3'
miRNA:   3'- gAGUUuAGaGGGUGCGGGGG-GCu--CCG- -5'
29085 5' -58 NC_006146.1 + 156059 0.67 0.809546
Target:  5'- cCUCGgc-CUCCCGCGgCCCC--GGGCc -3'
miRNA:   3'- -GAGUuuaGAGGGUGCgGGGGgcUCCG- -5'
29085 5' -58 NC_006146.1 + 53304 0.67 0.809546
Target:  5'- cCUCc--UCUCCCugGCCggaguccgagCCCGAGGa -3'
miRNA:   3'- -GAGuuuAGAGGGugCGGg---------GGGCUCCg -5'
29085 5' -58 NC_006146.1 + 13933 0.67 0.809546
Target:  5'- cCUCc--UCUCUC-C-CUCCCCGAGGCc -3'
miRNA:   3'- -GAGuuuAGAGGGuGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 119239 0.67 0.800907
Target:  5'- uUCuGAGUCccggcaccggCCCugGCCCCCUGGGaGUc -3'
miRNA:   3'- gAG-UUUAGa---------GGGugCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 2217 0.68 0.764984
Target:  5'- -cCAGcagUUCCUGCGCCUCCUG-GGCa -3'
miRNA:   3'- gaGUUua-GAGGGUGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 47899 0.69 0.707909
Target:  5'- gUCAGcgCUCCgAgaagaaGUCCCCCGuGGCc -3'
miRNA:   3'- gAGUUuaGAGGgUg-----CGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 129896 0.69 0.717623
Target:  5'- uUCGAccacguGUCUCUC-UGCgCCCUGGGGCg -3'
miRNA:   3'- gAGUU------UAGAGGGuGCGgGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 59733 0.69 0.727269
Target:  5'- -gCGcAUCUCUCGC-CUCCCCGAGcGCc -3'
miRNA:   3'- gaGUuUAGAGGGUGcGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 152649 0.69 0.727269
Target:  5'- --------aCCCACGCUCCCC-AGGCu -3'
miRNA:   3'- gaguuuagaGGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 48044 0.68 0.736836
Target:  5'- gCUCGGGUCgUCCA-GCgCCCCG-GGCa -3'
miRNA:   3'- -GAGUUUAGaGGGUgCGgGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 75517 0.68 0.736836
Target:  5'- cCUgAAGU-UCCUaugGCGCCCaCCGAGGCu -3'
miRNA:   3'- -GAgUUUAgAGGG---UGCGGGgGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 2404 0.68 0.746316
Target:  5'- gCUCuguuGGUC-CCCG-GCCCCCCGAccguggacgugaGGCc -3'
miRNA:   3'- -GAGu---UUAGaGGGUgCGGGGGGCU------------CCG- -5'
29085 5' -58 NC_006146.1 + 7460 0.68 0.755702
Target:  5'- -gCGAAaCU-UCACGCCCCCCGAGa- -3'
miRNA:   3'- gaGUUUaGAgGGUGCGGGGGGCUCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.