miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 164357 0.66 0.879567
Target:  5'- uCUCcuuUCUCCuCACGCCCgCCaucuGGUg -3'
miRNA:   3'- -GAGuuuAGAGG-GUGCGGGgGGcu--CCG- -5'
29085 5' -58 NC_006146.1 + 40406 0.66 0.857912
Target:  5'- ------cCUCCCGCgggggcaaaguaGCCaCCCGGGGCg -3'
miRNA:   3'- gaguuuaGAGGGUG------------CGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 20169 0.66 0.849527
Target:  5'- --gAGAUCcCUCGCcucuuugcagaggGCCCCCgGGGGCg -3'
miRNA:   3'- gagUUUAGaGGGUG-------------CGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 126122 0.66 0.842497
Target:  5'- -cCAGAUCcccggccuggguUCCC-CGCCCgCCG-GGCc -3'
miRNA:   3'- gaGUUUAG------------AGGGuGCGGGgGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 47940 0.66 0.842497
Target:  5'- ------cCUCCC-CGCCUCCCGcugcguggacAGGCu -3'
miRNA:   3'- gaguuuaGAGGGuGCGGGGGGC----------UCCG- -5'
29085 5' -58 NC_006146.1 + 128909 0.66 0.841707
Target:  5'- uUCGug-CUCgUcCGCCCCCCaguggacGAGGCa -3'
miRNA:   3'- gAGUuuaGAGgGuGCGGGGGG-------CUCCG- -5'
29085 5' -58 NC_006146.1 + 110438 0.66 0.842497
Target:  5'- ------cCUCUCAcCGCUCCCCGcGGCc -3'
miRNA:   3'- gaguuuaGAGGGU-GCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 153945 0.66 0.842497
Target:  5'- --gGAAgg-CCCGcCGCUCCCCGuuGGGCa -3'
miRNA:   3'- gagUUUagaGGGU-GCGGGGGGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 11028 0.66 0.850298
Target:  5'- --gGGGUCUCCCGCGCgaCCUCUGAaaGCa -3'
miRNA:   3'- gagUUUAGAGGGUGCG--GGGGGCUc-CG- -5'
29085 5' -58 NC_006146.1 + 42700 0.66 0.857912
Target:  5'- ----cGUCUggCCCggcgccgcgGCGCCCCCCuGGGCc -3'
miRNA:   3'- gaguuUAGA--GGG---------UGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 124611 0.66 0.865331
Target:  5'- gCUCGAG-CUCgaC-CGCCgCCaCCGGGGCu -3'
miRNA:   3'- -GAGUUUaGAGg-GuGCGG-GG-GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129469 0.66 0.865331
Target:  5'- -cCAGAUCUaggagCCUAgaaaacucgggUGCCCCCC-AGGCg -3'
miRNA:   3'- gaGUUUAGA-----GGGU-----------GCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 10120 0.66 0.879567
Target:  5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3'
miRNA:   3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5'
29085 5' -58 NC_006146.1 + 13064 0.66 0.879567
Target:  5'- gCUCGGug--CCCGuC-CCCUCCGGGGCc -3'
miRNA:   3'- -GAGUUuagaGGGU-GcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 117923 0.66 0.872551
Target:  5'- cCUCGAGaCgcccgCCC-CGCCCCgCGgaGGGCc -3'
miRNA:   3'- -GAGUUUaGa----GGGuGCGGGGgGC--UCCG- -5'
29085 5' -58 NC_006146.1 + 60633 0.66 0.872551
Target:  5'- aUCAcGUCUgCgAUgGCuCCCCCGAGuGCa -3'
miRNA:   3'- gAGUuUAGAgGgUG-CG-GGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 41025 0.66 0.872551
Target:  5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3'
miRNA:   3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 108484 0.66 0.872551
Target:  5'- uUCugcuUCUgCCugGCCUCCgaCGAGGUc -3'
miRNA:   3'- gAGuuu-AGAgGGugCGGGGG--GCUCCG- -5'
29085 5' -58 NC_006146.1 + 105699 0.66 0.872551
Target:  5'- -cCGGG-CUCCCAgGgCCCCCaGAGcGCc -3'
miRNA:   3'- gaGUUUaGAGGGUgCgGGGGG-CUC-CG- -5'
29085 5' -58 NC_006146.1 + 140028 0.66 0.871838
Target:  5'- gUCAGGUUcuuguguUCCCACGUCCCUgCGuucuGGUg -3'
miRNA:   3'- gAGUUUAG-------AGGGUGCGGGGG-GCu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.