miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 113134 1.11 0.001647
Target:  5'- cCUCAAAUCUCCCACGCCCCCCGAGGCu -3'
miRNA:   3'- -GAGUUUAGAGGGUGCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 66854 0.79 0.22007
Target:  5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3'
miRNA:   3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 37916 0.78 0.247712
Target:  5'- aUCAccgcaccgcGGUCUCCaC-CGCCCCCCGAGGa -3'
miRNA:   3'- gAGU---------UUAGAGG-GuGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 80270 0.78 0.265641
Target:  5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3'
miRNA:   3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 150713 0.78 0.271846
Target:  5'- ------cCUCCUGCGCCCCCgGGGGCc -3'
miRNA:   3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 42357 0.76 0.325705
Target:  5'- gCUCcaGGAUCUCCCGCGCCgCCagggugggcgaGGGGCg -3'
miRNA:   3'- -GAG--UUUAGAGGGUGCGGgGGg----------CUCCG- -5'
29085 5' -58 NC_006146.1 + 3018 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 1154 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 2086 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 120621 0.76 0.347851
Target:  5'- -aCAGAUCUCCUGCGCCCCUu--GGCc -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGgcuCCG- -5'
29085 5' -58 NC_006146.1 + 8770 0.76 0.347851
Target:  5'- aUUAAAUCUCCCACcgugggacgGCCCCCC-AGuGCa -3'
miRNA:   3'- gAGUUUAGAGGGUG---------CGGGGGGcUC-CG- -5'
29085 5' -58 NC_006146.1 + 117441 0.74 0.412001
Target:  5'- -aCGAggCaCCCGCGCCUCCCG-GGCa -3'
miRNA:   3'- gaGUUuaGaGGGUGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 19695 0.73 0.452942
Target:  5'- -gCAAAUCUCCUGCGUCCUCUgguccacgggggagGAGGCc -3'
miRNA:   3'- gaGUUUAGAGGGUGCGGGGGG--------------CUCCG- -5'
29085 5' -58 NC_006146.1 + 14866 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 21021 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 27177 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 24099 0.73 0.455631
Target:  5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3'
miRNA:   3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 121948 0.73 0.482973
Target:  5'- -cCAAucgCUCCCACaaCUCCCUGAGGCu -3'
miRNA:   3'- gaGUUua-GAGGGUGc-GGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129825 0.73 0.482973
Target:  5'- cCUCGc-UgUCCCugGCCucccuccaCCCCGAGGCc -3'
miRNA:   3'- -GAGUuuAgAGGGugCGG--------GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 115724 0.73 0.492262
Target:  5'- cCUCAAaggugacagcGUCcaCCCugGCCUCCCGGcGGCu -3'
miRNA:   3'- -GAGUU----------UAGa-GGGugCGGGGGGCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.