miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 373 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 440 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 1154 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 1304 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 1371 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 2086 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 2217 0.68 0.764984
Target:  5'- -cCAGcagUUCCUGCGCCUCCUG-GGCa -3'
miRNA:   3'- gaGUUua-GAGGGUGCGGGGGGCuCCG- -5'
29085 5' -58 NC_006146.1 + 2236 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 2303 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 2404 0.68 0.746316
Target:  5'- gCUCuguuGGUC-CCCG-GCCCCCCGAccguggacgugaGGCc -3'
miRNA:   3'- -GAGu---UUAGaGGGUgCGGGGGGCU------------CCG- -5'
29085 5' -58 NC_006146.1 + 3018 0.76 0.340351
Target:  5'- --aGGGUC-CCCGgGCCgCCCCGGGGCu -3'
miRNA:   3'- gagUUUAGaGGGUgCGG-GGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 3168 0.69 0.717623
Target:  5'- ---cAAUCg-CCGCGCCCCCUcAGGCc -3'
miRNA:   3'- gaguUUAGagGGUGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 3235 0.69 0.698133
Target:  5'- cCUCGGGUCgcgggaCACGCCCCCgGGucccccGGCa -3'
miRNA:   3'- -GAGUUUAGagg---GUGCGGGGGgCU------CCG- -5'
29085 5' -58 NC_006146.1 + 4018 0.67 0.795654
Target:  5'- aCUCAcg-CUCCUccuCGCCCUCCGcuccccccucccgccGGGCu -3'
miRNA:   3'- -GAGUuuaGAGGGu--GCGGGGGGC---------------UCCG- -5'
29085 5' -58 NC_006146.1 + 7278 0.71 0.578995
Target:  5'- --aAAAUCcugcCCCACGCCUUCCGGGGa -3'
miRNA:   3'- gagUUUAGa---GGGUGCGGGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 7460 0.68 0.755702
Target:  5'- -gCGAAaCU-UCACGCCCCCCGAGa- -3'
miRNA:   3'- gaGUUUaGAgGGUGCGGGGGGCUCcg -5'
29085 5' -58 NC_006146.1 + 8770 0.76 0.347851
Target:  5'- aUUAAAUCUCCCACcgugggacgGCCCCCC-AGuGCa -3'
miRNA:   3'- gAGUUUAGAGGGUG---------CGGGGGGcUC-CG- -5'
29085 5' -58 NC_006146.1 + 10005 0.69 0.69519
Target:  5'- -aCGGuUUUgCCACGCCCauuuuaacauaaaaCCCGGGGCa -3'
miRNA:   3'- gaGUUuAGAgGGUGCGGG--------------GGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 10120 0.66 0.879567
Target:  5'- -gUggGUCUCaCCcuCGCCCCCgGAcgacaaaguGGCa -3'
miRNA:   3'- gaGuuUAGAG-GGu-GCGGGGGgCU---------CCG- -5'
29085 5' -58 NC_006146.1 + 11028 0.66 0.850298
Target:  5'- --gGGGUCUCCCGCGCgaCCUCUGAaaGCa -3'
miRNA:   3'- gagUUUAGAGGGUGCG--GGGGGCUc-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.