Results 1 - 20 of 162 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29085 | 5' | -58 | NC_006146.1 | + | 113134 | 1.11 | 0.001647 |
Target: 5'- cCUCAAAUCUCCCACGCCCCCCGAGGCu -3' miRNA: 3'- -GAGUUUAGAGGGUGCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 119082 | 0.7 | 0.668524 |
Target: 5'- ------cCUCCgGCGCUUCCCGAGGa -3' miRNA: 3'- gaguuuaGAGGgUGCGGGGGGCUCCg -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 31312 | 0.7 | 0.678432 |
Target: 5'- -----uUCUCCUccuCGCCCCCCGcagccucauuGGGCu -3' miRNA: 3'- gaguuuAGAGGGu--GCGGGGGGC----------UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 160988 | 0.66 | 0.879567 |
Target: 5'- gCUCGcgggCUCCguCGCCUCCUGccuGGCc -3' miRNA: 3'- -GAGUuua-GAGGguGCGGGGGGCu--CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 14866 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 21021 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 27177 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 121948 | 0.73 | 0.482973 |
Target: 5'- -cCAAucgCUCCCACaaCUCCCUGAGGCu -3' miRNA: 3'- gaGUUua-GAGGGUGc-GGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 93059 | 0.72 | 0.520603 |
Target: 5'- gCUCAAAg-UCCCAC-CCCCCCGccGCc -3' miRNA: 3'- -GAGUUUagAGGGUGcGGGGGGCucCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 126922 | 0.7 | 0.648631 |
Target: 5'- aCUCAGccuccUCUCCCgcuggcaggaugGCGCUCUCCGGGcGCg -3' miRNA: 3'- -GAGUUu----AGAGGG------------UGCGGGGGGCUC-CG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 119891 | 0.71 | 0.598809 |
Target: 5'- uUCAG--UUCCCAUucuCCCCCCGuGGCg -3' miRNA: 3'- gAGUUuaGAGGGUGc--GGGGGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 115724 | 0.73 | 0.492262 |
Target: 5'- cCUCAAaggugacagcGUCcaCCCugGCCUCCCGGcGGCu -3' miRNA: 3'- -GAGUU----------UAGa-GGGugCGGGGGGCU-CCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 66854 | 0.79 | 0.22007 |
Target: 5'- gUCAuaGAUCUCCCcagcguccaggGCGCCCCCCG-GGUc -3' miRNA: 3'- gAGU--UUAGAGGG-----------UGCGGGGGGCuCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 100313 | 0.71 | 0.618716 |
Target: 5'- aUCAGAgUCUCCaCAUccuCCCCCCGgacGGGCa -3' miRNA: 3'- gAGUUU-AGAGG-GUGc--GGGGGGC---UCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 80270 | 0.78 | 0.265641 |
Target: 5'- gCUCAGGUCUggacacCCUAC-CUCCCCGGGGCg -3' miRNA: 3'- -GAGUUUAGA------GGGUGcGGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 129825 | 0.73 | 0.482973 |
Target: 5'- cCUCGc-UgUCCCugGCCucccuccaCCCCGAGGCc -3' miRNA: 3'- -GAGUuuAgAGGGugCGG--------GGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 104181 | 0.71 | 0.618716 |
Target: 5'- aUCcAGUCgcagggccgUCUGCGCCCCCaCGGGGCc -3' miRNA: 3'- gAGuUUAGa--------GGGUGCGGGGG-GCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 137699 | 0.7 | 0.678432 |
Target: 5'- gCUCccc-CUCCgGCcuCCCCCCGGGGUg -3' miRNA: 3'- -GAGuuuaGAGGgUGc-GGGGGGCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 150713 | 0.78 | 0.271846 |
Target: 5'- ------cCUCCUGCGCCCCCgGGGGCc -3' miRNA: 3'- gaguuuaGAGGGUGCGGGGGgCUCCG- -5' |
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29085 | 5' | -58 | NC_006146.1 | + | 24099 | 0.73 | 0.455631 |
Target: 5'- cCUCAc-UCUagcccUCCAgGCCCUCCGAGGCc -3' miRNA: 3'- -GAGUuuAGA-----GGGUgCGGGGGGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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