miRNA display CGI


Results 21 - 40 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29085 5' -58 NC_006146.1 + 41025 0.66 0.872551
Target:  5'- gUCGAagaagggcAUCUCCCccccguccgcgGCGgCCCUgGGGGCc -3'
miRNA:   3'- gAGUU--------UAGAGGG-----------UGCgGGGGgCUCCG- -5'
29085 5' -58 NC_006146.1 + 23256 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 29412 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 26334 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 20178 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 140028 0.66 0.871838
Target:  5'- gUCAGGUUcuuguguUCCCACGUCCCUgCGuucuGGUg -3'
miRNA:   3'- gAGUUUAG-------AGGGUGCGGGGG-GCu---CCG- -5'
29085 5' -58 NC_006146.1 + 17100 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 14022 0.66 0.871838
Target:  5'- -cCGAGUCcagcCCCGuccacccUGUCCCCCGcAGGCc -3'
miRNA:   3'- gaGUUUAGa---GGGU-------GCGGGGGGC-UCCG- -5'
29085 5' -58 NC_006146.1 + 124611 0.66 0.865331
Target:  5'- gCUCGAG-CUCgaC-CGCCgCCaCCGGGGCu -3'
miRNA:   3'- -GAGUUUaGAGg-GuGCGG-GG-GGCUCCG- -5'
29085 5' -58 NC_006146.1 + 129469 0.66 0.865331
Target:  5'- -cCAGAUCUaggagCCUAgaaaacucgggUGCCCCCC-AGGCg -3'
miRNA:   3'- gaGUUUAGA-----GGGU-----------GCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 94008 0.66 0.865331
Target:  5'- cCUCugg-CUCCCACGUgCggCCCGgcagGGGCa -3'
miRNA:   3'- -GAGuuuaGAGGGUGCGgG--GGGC----UCCG- -5'
29085 5' -58 NC_006146.1 + 47849 0.66 0.865331
Target:  5'- uCUCGAGgacccUCUCCUccaGCGCCCggaCCuGGGCc -3'
miRNA:   3'- -GAGUUU-----AGAGGG---UGCGGGg--GGcUCCG- -5'
29085 5' -58 NC_006146.1 + 40516 0.66 0.865331
Target:  5'- gCUCGGGgg-CCCACGUguuUUCCCGGGGg -3'
miRNA:   3'- -GAGUUUagaGGGUGCG---GGGGGCUCCg -5'
29085 5' -58 NC_006146.1 + 140754 0.66 0.865331
Target:  5'- uCUCGGAUgCguggccaugCCCAC-CCCCCUgcaugGGGGCg -3'
miRNA:   3'- -GAGUUUA-Ga--------GGGUGcGGGGGG-----CUCCG- -5'
29085 5' -58 NC_006146.1 + 111861 0.66 0.865331
Target:  5'- -aCAAAUC-CCUuguaaagagacGgGUCCCUCGGGGCa -3'
miRNA:   3'- gaGUUUAGaGGG-----------UgCGGGGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 47555 0.66 0.857912
Target:  5'- -cCAGAgCUCCCucgGCGagaCCCCUGAcGGCc -3'
miRNA:   3'- gaGUUUaGAGGG---UGCg--GGGGGCU-CCG- -5'
29085 5' -58 NC_006146.1 + 99893 0.66 0.857912
Target:  5'- ---uGAUCcggcgCCUcUGCCCCCCGGGcGCa -3'
miRNA:   3'- gaguUUAGa----GGGuGCGGGGGGCUC-CG- -5'
29085 5' -58 NC_006146.1 + 42700 0.66 0.857912
Target:  5'- ----cGUCUggCCCggcgccgcgGCGCCCCCCuGGGCc -3'
miRNA:   3'- gaguuUAGA--GGG---------UGCGGGGGGcUCCG- -5'
29085 5' -58 NC_006146.1 + 40406 0.66 0.857912
Target:  5'- ------cCUCCCGCgggggcaaaguaGCCaCCCGGGGCg -3'
miRNA:   3'- gaguuuaGAGGGUG------------CGGgGGGCUCCG- -5'
29085 5' -58 NC_006146.1 + 38352 0.66 0.857912
Target:  5'- -------aUCUCACGCUCcgaCCCGAGGCc -3'
miRNA:   3'- gaguuuagAGGGUGCGGG---GGGCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.