miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29086 3' -48.4 NC_006146.1 + 124756 0.66 0.99935
Target:  5'- cUGGGGcugguccacaaucagAGCAcGGCCAGGGcccggGCAUGCc -3'
miRNA:   3'- uAUCCU---------------UUGUcUCGGUUCUa----CGUACG- -5'
29086 3' -48.4 NC_006146.1 + 66719 0.66 0.99935
Target:  5'- -gGGGAGcACgucuuccauguucucGGAGUCAGGGgguggGCAUGCc -3'
miRNA:   3'- uaUCCUU-UG---------------UCUCGGUUCUa----CGUACG- -5'
29086 3' -48.4 NC_006146.1 + 139608 0.66 0.999291
Target:  5'- -gAGGAGaaggccuccAUGGAGCCGauGGGggagGCAUGUg -3'
miRNA:   3'- uaUCCUU---------UGUCUCGGU--UCUa---CGUACG- -5'
29086 3' -48.4 NC_006146.1 + 167753 0.66 0.999291
Target:  5'- -cAGGgcGCAgGGGCCGGGuggGCGcGCa -3'
miRNA:   3'- uaUCCuuUGU-CUCGGUUCua-CGUaCG- -5'
29086 3' -48.4 NC_006146.1 + 88852 0.66 0.999291
Target:  5'- gGUAGGGAaucgGCGGGGCCuGGGgcuguugugGC-UGCa -3'
miRNA:   3'- -UAUCCUU----UGUCUCGGuUCUa--------CGuACG- -5'
29086 3' -48.4 NC_006146.1 + 92083 0.66 0.999291
Target:  5'- cUGGGggGCGGcccGGCCuGGGgcUGC-UGCu -3'
miRNA:   3'- uAUCCuuUGUC---UCGGuUCU--ACGuACG- -5'
29086 3' -48.4 NC_006146.1 + 167097 0.66 0.999291
Target:  5'- -aGGGggGCGuGGCCAucccccGCGUGCc -3'
miRNA:   3'- uaUCCuuUGUcUCGGUucua--CGUACG- -5'
29086 3' -48.4 NC_006146.1 + 38313 0.66 0.999123
Target:  5'- -gAGGGAGUAGAGUauu--UGCAUGCg -3'
miRNA:   3'- uaUCCUUUGUCUCGguucuACGUACG- -5'
29086 3' -48.4 NC_006146.1 + 11566 0.66 0.999123
Target:  5'- --uGGAGGCGGcGCaCGAGAcGCcgGCc -3'
miRNA:   3'- uauCCUUUGUCuCG-GUUCUaCGuaCG- -5'
29086 3' -48.4 NC_006146.1 + 5868 0.66 0.999123
Target:  5'- uGUAGGAGACGGAGgCAauGGAaaCGgagGCa -3'
miRNA:   3'- -UAUCCUUUGUCUCgGU--UCUacGUa--CG- -5'
29086 3' -48.4 NC_006146.1 + 42300 0.66 0.999123
Target:  5'- -gAGGAGcgGGAGCCGGaGUGCccUGCg -3'
miRNA:   3'- uaUCCUUugUCUCGGUUcUACGu-ACG- -5'
29086 3' -48.4 NC_006146.1 + 137896 0.66 0.999123
Target:  5'- -gGGGGuccccgugGACAGGGCCGGGGguuccggggGCAgccGCg -3'
miRNA:   3'- uaUCCU--------UUGUCUCGGUUCUa--------CGUa--CG- -5'
29086 3' -48.4 NC_006146.1 + 12722 0.66 0.999104
Target:  5'- -gGGGuccuGACGGccaaggaGGCCAAGGUG-GUGCa -3'
miRNA:   3'- uaUCCu---UUGUC-------UCGGUUCUACgUACG- -5'
29086 3' -48.4 NC_006146.1 + 116808 0.66 0.998922
Target:  5'- -gGGGGAGCAGguuagGGuCCAAGA-GCGcGCa -3'
miRNA:   3'- uaUCCUUUGUC-----UC-GGUUCUaCGUaCG- -5'
29086 3' -48.4 NC_006146.1 + 48552 0.66 0.998922
Target:  5'- -aAGGAAuu-GAGCCAuGGUGCugaGCu -3'
miRNA:   3'- uaUCCUUuguCUCGGUuCUACGua-CG- -5'
29086 3' -48.4 NC_006146.1 + 109863 0.66 0.998922
Target:  5'- -gAGGGGAgGGAGaccgauaucgcCCAGGAUGCGaucgGCc -3'
miRNA:   3'- uaUCCUUUgUCUC-----------GGUUCUACGUa---CG- -5'
29086 3' -48.4 NC_006146.1 + 110065 0.66 0.998922
Target:  5'- -aGGGAAGCAGcGCgGGuGUGCA-GCa -3'
miRNA:   3'- uaUCCUUUGUCuCGgUUcUACGUaCG- -5'
29086 3' -48.4 NC_006146.1 + 110897 0.66 0.998922
Target:  5'- --cGGGGACGGGGCCGcGuugGCcuUGCa -3'
miRNA:   3'- uauCCUUUGUCUCGGUuCua-CGu-ACG- -5'
29086 3' -48.4 NC_006146.1 + 83151 0.66 0.9989
Target:  5'- cUGGGAGAUaauccagccacagAGGGCCuugauuucAAGGUGCA-GCa -3'
miRNA:   3'- uAUCCUUUG-------------UCUCGG--------UUCUACGUaCG- -5'
29086 3' -48.4 NC_006146.1 + 138741 0.66 0.998683
Target:  5'- -cGGGugGCuGAGCUGAGcgGCcUGCc -3'
miRNA:   3'- uaUCCuuUGuCUCGGUUCuaCGuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.