miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29086 5' -59.7 NC_006146.1 + 114706 0.66 0.73415
Target:  5'- -cGUCCGCGagaCCCGGGC-CCUGgCGg -3'
miRNA:   3'- uaUAGGCGUag-GGGUCCGcGGAC-GUa -5'
29086 5' -59.7 NC_006146.1 + 110013 0.66 0.73415
Target:  5'- -gAUCCaCugggCCCCAGGCcgGUCUGCAg -3'
miRNA:   3'- uaUAGGcGua--GGGGUCCG--CGGACGUa -5'
29086 5' -59.7 NC_006146.1 + 119043 0.66 0.724361
Target:  5'- -cAUCCcCAUCCCCGGGCucggGCCagGCc- -3'
miRNA:   3'- uaUAGGcGUAGGGGUCCG----CGGa-CGua -5'
29086 5' -59.7 NC_006146.1 + 116566 0.66 0.724361
Target:  5'- -cGUCCGCGUgCCCCucauccacguAGGgGCCaaggUGCAg -3'
miRNA:   3'- uaUAGGCGUA-GGGG----------UCCgCGG----ACGUa -5'
29086 5' -59.7 NC_006146.1 + 104196 0.66 0.724361
Target:  5'- -cGUCUGCGcCCCCAcGGgGCC-GCAa -3'
miRNA:   3'- uaUAGGCGUaGGGGU-CCgCGGaCGUa -5'
29086 5' -59.7 NC_006146.1 + 78840 0.66 0.724361
Target:  5'- ---cCCGCAgcagCCCCAGGCcggGCCcGCc- -3'
miRNA:   3'- uauaGGCGUa---GGGGUCCG---CGGaCGua -5'
29086 5' -59.7 NC_006146.1 + 4800 0.66 0.724361
Target:  5'- --uUCUGCG-CCCgGGGCGCCU-CAa -3'
miRNA:   3'- uauAGGCGUaGGGgUCCGCGGAcGUa -5'
29086 5' -59.7 NC_006146.1 + 150714 0.66 0.714494
Target:  5'- --cUCCuGCGcCCCCGGGgGCCcucUGCAa -3'
miRNA:   3'- uauAGG-CGUaGGGGUCCgCGG---ACGUa -5'
29086 5' -59.7 NC_006146.1 + 129911 0.66 0.714494
Target:  5'- --cUCUGCGcCCUgGGGCGCCgGCGc -3'
miRNA:   3'- uauAGGCGUaGGGgUCCGCGGaCGUa -5'
29086 5' -59.7 NC_006146.1 + 149909 0.66 0.694561
Target:  5'- -aGUCCGUGUCCCCGuagaugacucGuaGCCUGCc- -3'
miRNA:   3'- uaUAGGCGUAGGGGU----------CcgCGGACGua -5'
29086 5' -59.7 NC_006146.1 + 41048 0.66 0.694561
Target:  5'- -cGUCCGCGgcggCCCUGGGgGCCU-CGg -3'
miRNA:   3'- uaUAGGCGUa---GGGGUCCgCGGAcGUa -5'
29086 5' -59.7 NC_006146.1 + 74085 0.66 0.694561
Target:  5'- ---cCCGCccGUCCCCaccAGGgaaGCCUGCAg -3'
miRNA:   3'- uauaGGCG--UAGGGG---UCCg--CGGACGUa -5'
29086 5' -59.7 NC_006146.1 + 60712 0.67 0.674421
Target:  5'- cAUGgggCCGCAUCUCCAaccGGCGCUgagGCc- -3'
miRNA:   3'- -UAUa--GGCGUAGGGGU---CCGCGGa--CGua -5'
29086 5' -59.7 NC_006146.1 + 99101 0.67 0.664295
Target:  5'- -gGUCCGCAcgUCCC--GCGCCUGCc- -3'
miRNA:   3'- uaUAGGCGUa-GGGGucCGCGGACGua -5'
29086 5' -59.7 NC_006146.1 + 71171 0.67 0.654144
Target:  5'- -gGUCCGCGUCCUCGGaGCaCC-GCGUc -3'
miRNA:   3'- uaUAGGCGUAGGGGUC-CGcGGaCGUA- -5'
29086 5' -59.7 NC_006146.1 + 126238 0.67 0.643975
Target:  5'- -cGUCCGUuuugggaCCCAGGCGCCcggGCu- -3'
miRNA:   3'- uaUAGGCGuag----GGGUCCGCGGa--CGua -5'
29086 5' -59.7 NC_006146.1 + 40059 0.67 0.643975
Target:  5'- cGUGUCCGUaggacagcGUCUCCcGGCggaggGCCUGCAg -3'
miRNA:   3'- -UAUAGGCG--------UAGGGGuCCG-----CGGACGUa -5'
29086 5' -59.7 NC_006146.1 + 101042 0.68 0.623618
Target:  5'- -gGUCCuGCAUgCCU--GCGCCUGCGUg -3'
miRNA:   3'- uaUAGG-CGUAgGGGucCGCGGACGUA- -5'
29086 5' -59.7 NC_006146.1 + 44654 0.68 0.603286
Target:  5'- --cUCC-CAagCCCGGGCGCCUGgGUc -3'
miRNA:   3'- uauAGGcGUagGGGUCCGCGGACgUA- -5'
29086 5' -59.7 NC_006146.1 + 39176 0.68 0.603286
Target:  5'- -gGUCCGUGucUCUCCAGGUGCCcaucaGCAg -3'
miRNA:   3'- uaUAGGCGU--AGGGGUCCGCGGa----CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.