Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29086 | 5' | -59.7 | NC_006146.1 | + | 114706 | 0.66 | 0.73415 |
Target: 5'- -cGUCCGCGagaCCCGGGC-CCUGgCGg -3' miRNA: 3'- uaUAGGCGUag-GGGUCCGcGGAC-GUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 41048 | 0.66 | 0.694561 |
Target: 5'- -cGUCCGCGgcggCCCUGGGgGCCU-CGg -3' miRNA: 3'- uaUAGGCGUa---GGGGUCCgCGGAcGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 74085 | 0.66 | 0.694561 |
Target: 5'- ---cCCGCccGUCCCCaccAGGgaaGCCUGCAg -3' miRNA: 3'- uauaGGCG--UAGGGG---UCCg--CGGACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 119043 | 0.66 | 0.724361 |
Target: 5'- -cAUCCcCAUCCCCGGGCucggGCCagGCc- -3' miRNA: 3'- uaUAGGcGUAGGGGUCCG----CGGa-CGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 110013 | 0.66 | 0.73415 |
Target: 5'- -gAUCCaCugggCCCCAGGCcgGUCUGCAg -3' miRNA: 3'- uaUAGGcGua--GGGGUCCG--CGGACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 116566 | 0.66 | 0.724361 |
Target: 5'- -cGUCCGCGUgCCCCucauccacguAGGgGCCaaggUGCAg -3' miRNA: 3'- uaUAGGCGUA-GGGG----------UCCgCGG----ACGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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