Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29086 | 5' | -59.7 | NC_006146.1 | + | 150714 | 0.66 | 0.714494 |
Target: 5'- --cUCCuGCGcCCCCGGGgGCCcucUGCAa -3' miRNA: 3'- uauAGG-CGUaGGGGUCCgCGG---ACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 98396 | 0.71 | 0.447775 |
Target: 5'- -cGUCCGCuccUCCgCAGGCG-CUGCAg -3' miRNA: 3'- uaUAGGCGu--AGGgGUCCGCgGACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 48052 | 0.69 | 0.552946 |
Target: 5'- -cGUCCaGCG-CCCCGGGCaGCgUGCGg -3' miRNA: 3'- uaUAGG-CGUaGGGGUCCG-CGgACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 57873 | 0.68 | 0.583039 |
Target: 5'- ---gCCGaCGUCCugCCGGGCGUCUGCu- -3' miRNA: 3'- uauaGGC-GUAGG--GGUCCGCGGACGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 44654 | 0.68 | 0.603286 |
Target: 5'- --cUCC-CAagCCCGGGCGCCUGgGUc -3' miRNA: 3'- uauAGGcGUagGGGUCCGCGGACgUA- -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 39176 | 0.68 | 0.603286 |
Target: 5'- -gGUCCGUGucUCUCCAGGUGCCcaucaGCAg -3' miRNA: 3'- uaUAGGCGU--AGGGGUCCGCGGa----CGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 101042 | 0.68 | 0.623618 |
Target: 5'- -gGUCCuGCAUgCCU--GCGCCUGCGUg -3' miRNA: 3'- uaUAGG-CGUAgGGGucCGCGGACGUA- -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 99101 | 0.67 | 0.664295 |
Target: 5'- -gGUCCGCAcgUCCC--GCGCCUGCc- -3' miRNA: 3'- uaUAGGCGUa-GGGGucCGCGGACGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 149909 | 0.66 | 0.694561 |
Target: 5'- -aGUCCGUGUCCCCGuagaugacucGuaGCCUGCc- -3' miRNA: 3'- uaUAGGCGUAGGGGU----------CcgCGGACGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 139154 | 0.71 | 0.438753 |
Target: 5'- --cUCC-CGUCCCCcggggGGGCGCCUGUg- -3' miRNA: 3'- uauAGGcGUAGGGG-----UCCGCGGACGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 114319 | 1.03 | 0.002842 |
Target: 5'- cAUAUCCGCAUCCCCAGGCGCCUGCAUc -3' miRNA: 3'- -UAUAGGCGUAGGGGUCCGCGGACGUA- -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 129911 | 0.66 | 0.714494 |
Target: 5'- --cUCUGCGcCCUgGGGCGCCgGCGc -3' miRNA: 3'- uauAGGCGUaGGGgUCCGCGGaCGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 116566 | 0.66 | 0.724361 |
Target: 5'- -cGUCCGCGUgCCCCucauccacguAGGgGCCaaggUGCAg -3' miRNA: 3'- uaUAGGCGUA-GGGG----------UCCgCGG----ACGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 104196 | 0.66 | 0.724361 |
Target: 5'- -cGUCUGCGcCCCCAcGGgGCC-GCAa -3' miRNA: 3'- uaUAGGCGUaGGGGU-CCgCGGaCGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 4800 | 0.66 | 0.724361 |
Target: 5'- --uUCUGCG-CCCgGGGCGCCU-CAa -3' miRNA: 3'- uauAGGCGUaGGGgUCCGCGGAcGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 78840 | 0.66 | 0.724361 |
Target: 5'- ---cCCGCAgcagCCCCAGGCcggGCCcGCc- -3' miRNA: 3'- uauaGGCGUa---GGGGUCCG---CGGaCGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 119043 | 0.66 | 0.724361 |
Target: 5'- -cAUCCcCAUCCCCGGGCucggGCCagGCc- -3' miRNA: 3'- uaUAGGcGUAGGGGUCCG----CGGa-CGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 41048 | 0.66 | 0.694561 |
Target: 5'- -cGUCCGCGgcggCCCUGGGgGCCU-CGg -3' miRNA: 3'- uaUAGGCGUa---GGGGUCCgCGGAcGUa -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 60712 | 0.67 | 0.674421 |
Target: 5'- cAUGgggCCGCAUCUCCAaccGGCGCUgagGCc- -3' miRNA: 3'- -UAUa--GGCGUAGGGGU---CCGCGGa--CGua -5' |
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29086 | 5' | -59.7 | NC_006146.1 | + | 71171 | 0.67 | 0.654144 |
Target: 5'- -gGUCCGCGUCCUCGGaGCaCC-GCGUc -3' miRNA: 3'- uaUAGGCGUAGGGGUC-CGcGGaCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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