miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29087 3' -51.3 NC_006146.1 + 162065 0.66 0.994338
Target:  5'- aACCugGAugUuuaGCuaAUCUUGGUGUUGUu -3'
miRNA:   3'- gUGGugUUugA---CG--UGGAGCCACAACG- -5'
29087 3' -51.3 NC_006146.1 + 62363 0.66 0.994338
Target:  5'- aGCCACccGCUGUacgaggacgggGCCUCGGccUGggGUa -3'
miRNA:   3'- gUGGUGuuUGACG-----------UGGAGCC--ACaaCG- -5'
29087 3' -51.3 NC_006146.1 + 139087 0.66 0.994338
Target:  5'- gGCCACGGGCcuCGCCUggaguUGG-GUUGCg -3'
miRNA:   3'- gUGGUGUUUGacGUGGA-----GCCaCAACG- -5'
29087 3' -51.3 NC_006146.1 + 143516 0.66 0.994338
Target:  5'- uGCCACGcguCUGUGCCcCGGU--UGCu -3'
miRNA:   3'- gUGGUGUuu-GACGUGGaGCCAcaACG- -5'
29087 3' -51.3 NC_006146.1 + 122585 0.66 0.993448
Target:  5'- cCACCACcgcCaGCACCUccgaCGGUGgaggGCg -3'
miRNA:   3'- -GUGGUGuuuGaCGUGGA----GCCACaa--CG- -5'
29087 3' -51.3 NC_006146.1 + 42648 0.66 0.99316
Target:  5'- gGCCGCGuguACUGCuccaacugcggcucGCCcgCGGUGggcUGCc -3'
miRNA:   3'- gUGGUGUu--UGACG--------------UGGa-GCCACa--ACG- -5'
29087 3' -51.3 NC_006146.1 + 121757 0.66 0.99245
Target:  5'- -cCCugGAACccgUGCGCCU-GGUGgcuuUGCa -3'
miRNA:   3'- guGGugUUUG---ACGUGGAgCCACa---ACG- -5'
29087 3' -51.3 NC_006146.1 + 44211 0.66 0.991334
Target:  5'- aGCCGgGGGCgGUGCCUUGGUGa--- -3'
miRNA:   3'- gUGGUgUUUGaCGUGGAGCCACaacg -5'
29087 3' -51.3 NC_006146.1 + 94230 0.66 0.991334
Target:  5'- aGCCGCAGACgGacuUCUUGGUcUUGCa -3'
miRNA:   3'- gUGGUGUUUGaCgu-GGAGCCAcAACG- -5'
29087 3' -51.3 NC_006146.1 + 133661 0.66 0.991334
Target:  5'- gGCC-C-AACUGCACCU-GGUGUa-- -3'
miRNA:   3'- gUGGuGuUUGACGUGGAgCCACAacg -5'
29087 3' -51.3 NC_006146.1 + 59555 0.66 0.990093
Target:  5'- uCGCC-CuGAUgccCACCUCGG-GUUGCg -3'
miRNA:   3'- -GUGGuGuUUGac-GUGGAGCCaCAACG- -5'
29087 3' -51.3 NC_006146.1 + 150874 0.66 0.990093
Target:  5'- gGCCGguGA-UGCggACCUUGGUGUUGg -3'
miRNA:   3'- gUGGUguUUgACG--UGGAGCCACAACg -5'
29087 3' -51.3 NC_006146.1 + 110524 0.66 0.990093
Target:  5'- -uCCAgGcGCUGCACCUCGGa----- -3'
miRNA:   3'- guGGUgUuUGACGUGGAGCCacaacg -5'
29087 3' -51.3 NC_006146.1 + 13398 0.66 0.990093
Target:  5'- gGCCACGGACUGCcucaGCCa-GGUc-UGCa -3'
miRNA:   3'- gUGGUGUUUGACG----UGGagCCAcaACG- -5'
29087 3' -51.3 NC_006146.1 + 33413 0.67 0.988716
Target:  5'- cCGCCugGGcaccGCUGCGCCgccgcUCGGUccuGggGCu -3'
miRNA:   3'- -GUGGugUU----UGACGUGG-----AGCCA---CaaCG- -5'
29087 3' -51.3 NC_006146.1 + 78197 0.67 0.988716
Target:  5'- aCGCCACGAggggucgcugucACUGC-CCUCcgacuGGUcuucGUUGCu -3'
miRNA:   3'- -GUGGUGUU------------UGACGuGGAG-----CCA----CAACG- -5'
29087 3' -51.3 NC_006146.1 + 112396 0.67 0.988716
Target:  5'- aCGCCGCAGggGCUGCcguGCCUguggaugucacCaGUGUUGUg -3'
miRNA:   3'- -GUGGUGUU--UGACG---UGGA-----------GcCACAACG- -5'
29087 3' -51.3 NC_006146.1 + 121150 0.67 0.987194
Target:  5'- cUACCGCGAGCUGCucuACCUgGGcaccGCc -3'
miRNA:   3'- -GUGGUGUUUGACG---UGGAgCCacaaCG- -5'
29087 3' -51.3 NC_006146.1 + 59171 0.67 0.98552
Target:  5'- cCACC-CAGugUGcCACCUuugUGGUGgccUGCu -3'
miRNA:   3'- -GUGGuGUUugAC-GUGGA---GCCACa--ACG- -5'
29087 3' -51.3 NC_006146.1 + 31596 0.68 0.979487
Target:  5'- cCACUACAGGCUGaCACCaCGGgggauggGCu -3'
miRNA:   3'- -GUGGUGUUUGAC-GUGGaGCCacaa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.