miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29087 5' -60.9 NC_006146.1 + 7105 0.66 0.712277
Target:  5'- -gGCCCGCCaAGGCcCaGGCUGcaUACUa -3'
miRNA:   3'- caCGGGUGGgUCCGcGaCCGAC--AUGA- -5'
29087 5' -60.9 NC_006146.1 + 82073 0.66 0.692681
Target:  5'- -gGCCUGCuUCAGGUGCUGGgaGU-CUc -3'
miRNA:   3'- caCGGGUG-GGUCCGCGACCgaCAuGA- -5'
29087 5' -60.9 NC_006146.1 + 21268 0.66 0.682807
Target:  5'- cGUGCUCGaCCuGGUGCUGGCgg-ACg -3'
miRNA:   3'- -CACGGGUgGGuCCGCGACCGacaUGa -5'
29087 5' -60.9 NC_006146.1 + 153196 0.66 0.682807
Target:  5'- -cGUCC-CCCAGGCGCUuGGCcGccACg -3'
miRNA:   3'- caCGGGuGGGUCCGCGA-CCGaCa-UGa -5'
29087 5' -60.9 NC_006146.1 + 145056 0.66 0.682807
Target:  5'- -cGCgCAgCCCuGGCGCUGGaUGUAUc -3'
miRNA:   3'- caCGgGU-GGGuCCGCGACCgACAUGa -5'
29087 5' -60.9 NC_006146.1 + 8511 0.66 0.681817
Target:  5'- -gGCCCAccgggguCCCGGGCGCgGGCg----- -3'
miRNA:   3'- caCGGGU-------GGGUCCGCGaCCGacauga -5'
29087 5' -60.9 NC_006146.1 + 123041 0.66 0.672892
Target:  5'- -gGCCCAggUCCGGGCGCUGGa------ -3'
miRNA:   3'- caCGGGU--GGGUCCGCGACCgacauga -5'
29087 5' -60.9 NC_006146.1 + 16659 0.66 0.662946
Target:  5'- -gGCCCACCagcGGC-CUGGCuaacggUGUGCg -3'
miRNA:   3'- caCGGGUGGgu-CCGcGACCG------ACAUGa -5'
29087 5' -60.9 NC_006146.1 + 13552 0.66 0.662946
Target:  5'- cUGCagGCgCCGGGCGCcgGGCUGcGCa -3'
miRNA:   3'- cACGggUG-GGUCCGCGa-CCGACaUGa -5'
29087 5' -60.9 NC_006146.1 + 126531 0.66 0.652977
Target:  5'- -cGCCC-CCCGGGCGggGGuCUG-GCa -3'
miRNA:   3'- caCGGGuGGGUCCGCgaCC-GACaUGa -5'
29087 5' -60.9 NC_006146.1 + 48302 0.67 0.642991
Target:  5'- -cGCCCcucGCCCuccaccgucggAGGUGCUGGCgGUGgUg -3'
miRNA:   3'- caCGGG---UGGG-----------UCCGCGACCGaCAUgA- -5'
29087 5' -60.9 NC_006146.1 + 99906 0.67 0.632997
Target:  5'- cUGCCC-CCCGGGCGCaagagcgGGCUc---- -3'
miRNA:   3'- cACGGGuGGGUCCGCGa------CCGAcauga -5'
29087 5' -60.9 NC_006146.1 + 140770 0.67 0.632997
Target:  5'- aUGCCCACCCcccugcauggGGGCGCUcugUGUGCc -3'
miRNA:   3'- cACGGGUGGG----------UCCGCGAccgACAUGa -5'
29087 5' -60.9 NC_006146.1 + 14618 0.67 0.629
Target:  5'- uGUGCCCugCU-GGCGCUGcGUgggggagcucaugGUGCUg -3'
miRNA:   3'- -CACGGGugGGuCCGCGAC-CGa------------CAUGA- -5'
29087 5' -60.9 NC_006146.1 + 39759 0.67 0.627
Target:  5'- gGUGUCCAgCagaucgcagacgcggCAGGUGCUGGCUGg--- -3'
miRNA:   3'- -CACGGGUgG---------------GUCCGCGACCGACauga -5'
29087 5' -60.9 NC_006146.1 + 129489 0.67 0.623003
Target:  5'- -cGCCCACCCA-GCGC-GGCcGU-CUa -3'
miRNA:   3'- caCGGGUGGGUcCGCGaCCGaCAuGA- -5'
29087 5' -60.9 NC_006146.1 + 46125 0.67 0.623003
Target:  5'- -gGCaUGCCCGGGCcCUGGCcGUGCUc -3'
miRNA:   3'- caCGgGUGGGUCCGcGACCGaCAUGA- -5'
29087 5' -60.9 NC_006146.1 + 102641 0.68 0.583162
Target:  5'- aUGUUCACCCGGG-GCUGGCaGU-CUc -3'
miRNA:   3'- cACGGGUGGGUCCgCGACCGaCAuGA- -5'
29087 5' -60.9 NC_006146.1 + 52920 0.68 0.583162
Target:  5'- -gGCCC-CCCggGGGCGCUGGCc----- -3'
miRNA:   3'- caCGGGuGGG--UCCGCGACCGacauga -5'
29087 5' -60.9 NC_006146.1 + 43069 0.68 0.573269
Target:  5'- -aGCCCACCCuccAGG-GgaGGCUGgagGCg -3'
miRNA:   3'- caCGGGUGGG---UCCgCgaCCGACa--UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.