miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29088 3' -56.9 NC_006146.1 + 170378 0.66 0.893755
Target:  5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3'
miRNA:   3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5'
29088 3' -56.9 NC_006146.1 + 169447 0.66 0.893755
Target:  5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3'
miRNA:   3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5'
29088 3' -56.9 NC_006146.1 + 168515 0.66 0.893755
Target:  5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3'
miRNA:   3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5'
29088 3' -56.9 NC_006146.1 + 167583 0.66 0.893755
Target:  5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3'
miRNA:   3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5'
29088 3' -56.9 NC_006146.1 + 158544 0.66 0.893755
Target:  5'- cCCGggGUcccUGGGGCuCCUUCUCCAGc -3'
miRNA:   3'- uGGCa-CAacuACUCCG-GGGAGAGGUC- -5'
29088 3' -56.9 NC_006146.1 + 44809 0.66 0.893755
Target:  5'- -gUGUGUUucUGAGGCCCCgCUgCGGc -3'
miRNA:   3'- ugGCACAAcuACUCCGGGGaGAgGUC- -5'
29088 3' -56.9 NC_006146.1 + 169814 0.66 0.880183
Target:  5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3'
miRNA:   3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5'
29088 3' -56.9 NC_006146.1 + 168882 0.66 0.880183
Target:  5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3'
miRNA:   3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5'
29088 3' -56.9 NC_006146.1 + 167950 0.66 0.880183
Target:  5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3'
miRNA:   3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5'
29088 3' -56.9 NC_006146.1 + 99032 0.67 0.84256
Target:  5'- gGCCGUGUa---GAGGCCCC---CCAGg -3'
miRNA:   3'- -UGGCACAacuaCUCCGGGGagaGGUC- -5'
29088 3' -56.9 NC_006146.1 + 170745 0.68 0.791329
Target:  5'- aGCCGagcgUGAcGAaGCCCCUCUCCGa -3'
miRNA:   3'- -UGGCaca-ACUaCUcCGGGGAGAGGUc -5'
29088 3' -56.9 NC_006146.1 + 51225 0.69 0.767453
Target:  5'- gGCCGggguggcgggugagGUUGGUGAuGGCCCUUgUCCuGa -3'
miRNA:   3'- -UGGCa-------------CAACUACU-CCGGGGAgAGGuC- -5'
29088 3' -56.9 NC_006146.1 + 63778 0.69 0.762765
Target:  5'- cACCGUucugcuuGUcugGGUGaAGGCCCCUUcCCAGa -3'
miRNA:   3'- -UGGCA-------CAa--CUAC-UCCGGGGAGaGGUC- -5'
29088 3' -56.9 NC_006146.1 + 75868 0.69 0.735049
Target:  5'- gAUCGUGgugGAcGAGGCcgggaCCCUCUCCGu -3'
miRNA:   3'- -UGGCACaa-CUaCUCCG-----GGGAGAGGUc -5'
29088 3' -56.9 NC_006146.1 + 164447 0.69 0.715492
Target:  5'- gGCCGUgGUUGuuguUGGGGCCCCauggaCcCCAGg -3'
miRNA:   3'- -UGGCA-CAACu---ACUCCGGGGa----GaGGUC- -5'
29088 3' -56.9 NC_006146.1 + 63938 0.7 0.675612
Target:  5'- uACUGggGUUGAauucuaGCCCCUCUCCAGa -3'
miRNA:   3'- -UGGCa-CAACUacuc--CGGGGAGAGGUC- -5'
29088 3' -56.9 NC_006146.1 + 72386 0.71 0.604784
Target:  5'- cCCGaGUcgGGUGGGGCCCCUCcaUCaCAGg -3'
miRNA:   3'- uGGCaCAa-CUACUCCGGGGAG--AG-GUC- -5'
29088 3' -56.9 NC_006146.1 + 118440 1.09 0.002548
Target:  5'- gACCGUGUUGAUGAGGCCCCUCUCCAGg -3'
miRNA:   3'- -UGGCACAACUACUCCGGGGAGAGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.