Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29088 | 3' | -56.9 | NC_006146.1 | + | 170378 | 0.66 | 0.893755 |
Target: 5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3' miRNA: 3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 169447 | 0.66 | 0.893755 |
Target: 5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3' miRNA: 3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 168515 | 0.66 | 0.893755 |
Target: 5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3' miRNA: 3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 167583 | 0.66 | 0.893755 |
Target: 5'- gGCCGUGUgug-GAGGCCgggCCUCcCCuGg -3' miRNA: 3'- -UGGCACAacuaCUCCGG---GGAGaGGuC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 158544 | 0.66 | 0.893755 |
Target: 5'- cCCGggGUcccUGGGGCuCCUUCUCCAGc -3' miRNA: 3'- uGGCa-CAacuACUCCG-GGGAGAGGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 44809 | 0.66 | 0.893755 |
Target: 5'- -gUGUGUUucUGAGGCCCCgCUgCGGc -3' miRNA: 3'- ugGCACAAcuACUCCGGGGaGAgGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 169814 | 0.66 | 0.880183 |
Target: 5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3' miRNA: 3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 168882 | 0.66 | 0.880183 |
Target: 5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3' miRNA: 3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 167950 | 0.66 | 0.880183 |
Target: 5'- aGCCGagcgUGAcGAaGCCCCUCUCCu- -3' miRNA: 3'- -UGGCaca-ACUaCUcCGGGGAGAGGuc -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 99032 | 0.67 | 0.84256 |
Target: 5'- gGCCGUGUa---GAGGCCCC---CCAGg -3' miRNA: 3'- -UGGCACAacuaCUCCGGGGagaGGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 170745 | 0.68 | 0.791329 |
Target: 5'- aGCCGagcgUGAcGAaGCCCCUCUCCGa -3' miRNA: 3'- -UGGCaca-ACUaCUcCGGGGAGAGGUc -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 63778 | 0.69 | 0.762765 |
Target: 5'- cACCGUucugcuuGUcugGGUGaAGGCCCCUUcCCAGa -3' miRNA: 3'- -UGGCA-------CAa--CUAC-UCCGGGGAGaGGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 164447 | 0.69 | 0.715492 |
Target: 5'- gGCCGUgGUUGuuguUGGGGCCCCauggaCcCCAGg -3' miRNA: 3'- -UGGCA-CAACu---ACUCCGGGGa----GaGGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 75868 | 0.69 | 0.735049 |
Target: 5'- gAUCGUGgugGAcGAGGCcgggaCCCUCUCCGu -3' miRNA: 3'- -UGGCACaa-CUaCUCCG-----GGGAGAGGUc -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 51225 | 0.69 | 0.767453 |
Target: 5'- gGCCGggguggcgggugagGUUGGUGAuGGCCCUUgUCCuGa -3' miRNA: 3'- -UGGCa-------------CAACUACU-CCGGGGAgAGGuC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 63938 | 0.7 | 0.675612 |
Target: 5'- uACUGggGUUGAauucuaGCCCCUCUCCAGa -3' miRNA: 3'- -UGGCa-CAACUacuc--CGGGGAGAGGUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 72386 | 0.71 | 0.604784 |
Target: 5'- cCCGaGUcgGGUGGGGCCCCUCcaUCaCAGg -3' miRNA: 3'- uGGCaCAa-CUACUCCGGGGAG--AG-GUC- -5' |
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29088 | 3' | -56.9 | NC_006146.1 | + | 118440 | 1.09 | 0.002548 |
Target: 5'- gACCGUGUUGAUGAGGCCCCUCUCCAGg -3' miRNA: 3'- -UGGCACAACUACUCCGGGGAGAGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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