miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29088 5' -60.2 NC_006146.1 + 71678 0.66 0.70743
Target:  5'- aGACggUGGucGGGCGcgccGAGGCCGCGGcCUc -3'
miRNA:   3'- -UUG--ACCu-CCCGU----CUCCGGUGCCaGAa -5'
29088 5' -60.2 NC_006146.1 + 51197 0.66 0.70743
Target:  5'- gGGCUGGcgugguacAGGGCAuccacGAGGCCGgGGUg-- -3'
miRNA:   3'- -UUGACC--------UCCCGU-----CUCCGGUgCCAgaa -5'
29088 5' -60.2 NC_006146.1 + 89573 0.66 0.70743
Target:  5'- -uUUGGAgggugGGGCGGAGGaCUugGGUUg- -3'
miRNA:   3'- uuGACCU-----CCCGUCUCC-GGugCCAGaa -5'
29088 5' -60.2 NC_006146.1 + 90263 0.66 0.70743
Target:  5'- gAGgaGGAGgcaguagaGGUAGAGGCCGUGGUCg- -3'
miRNA:   3'- -UUgaCCUC--------CCGUCUCCGGUGCCAGaa -5'
29088 5' -60.2 NC_006146.1 + 167265 0.66 0.697499
Target:  5'- ---gGGAGGGCccGGGGCCGCGcGUg-- -3'
miRNA:   3'- uugaCCUCCCGu-CUCCGGUGC-CAgaa -5'
29088 5' -60.2 NC_006146.1 + 170061 0.66 0.697499
Target:  5'- ---gGGAGGGCccGGGGCCGCGcGUg-- -3'
miRNA:   3'- uugaCCUCCCGu-CUCCGGUGC-CAgaa -5'
29088 5' -60.2 NC_006146.1 + 169129 0.66 0.697499
Target:  5'- ---gGGAGGGCccGGGGCCGCGcGUg-- -3'
miRNA:   3'- uugaCCUCCCGu-CUCCGGUGC-CAgaa -5'
29088 5' -60.2 NC_006146.1 + 168197 0.66 0.697499
Target:  5'- ---gGGAGGGCccGGGGCCGCGcGUg-- -3'
miRNA:   3'- uugaCCUCCCGu-CUCCGGUGC-CAgaa -5'
29088 5' -60.2 NC_006146.1 + 133573 0.66 0.687514
Target:  5'- gGACUGGAGGGguGAGcuuGCaaaauUugGGUCc- -3'
miRNA:   3'- -UUGACCUCCCguCUC---CG-----GugCCAGaa -5'
29088 5' -60.2 NC_006146.1 + 72518 0.66 0.677485
Target:  5'- ---cGGAGGaGCGGAcGGCUGCGGcUCUc -3'
miRNA:   3'- uugaCCUCC-CGUCU-CCGGUGCC-AGAa -5'
29088 5' -60.2 NC_006146.1 + 69539 0.66 0.677485
Target:  5'- --aUGGGGGGUGGGGGCauugaCAgGGUCa- -3'
miRNA:   3'- uugACCUCCCGUCUCCG-----GUgCCAGaa -5'
29088 5' -60.2 NC_006146.1 + 40482 0.66 0.667419
Target:  5'- ---aGGGGGGCAGAggGGCCGCGa---- -3'
miRNA:   3'- uugaCCUCCCGUCU--CCGGUGCcagaa -5'
29088 5' -60.2 NC_006146.1 + 26093 0.67 0.657325
Target:  5'- cAGCcgGGAGGGgaggcaCGGAGGCCACaauuGGUCc- -3'
miRNA:   3'- -UUGa-CCUCCC------GUCUCCGGUG----CCAGaa -5'
29088 5' -60.2 NC_006146.1 + 85892 0.67 0.637085
Target:  5'- cGCUGGAacuaGGGUgAGAGaGCCGCGGggCUUu -3'
miRNA:   3'- uUGACCU----CCCG-UCUC-CGGUGCCa-GAA- -5'
29088 5' -60.2 NC_006146.1 + 49078 0.67 0.637085
Target:  5'- ---aGGAGGGCuGAGGCUcCGG-CUg -3'
miRNA:   3'- uugaCCUCCCGuCUCCGGuGCCaGAa -5'
29088 5' -60.2 NC_006146.1 + 122604 0.67 0.637085
Target:  5'- cGACggUGGAGGGCgaggggcggaGGAGGCCGgGGcccUCUUu -3'
miRNA:   3'- -UUG--ACCUCCCG----------UCUCCGGUgCC---AGAA- -5'
29088 5' -60.2 NC_006146.1 + 90155 0.67 0.626956
Target:  5'- gAGCaGGAGgcagccgaGGUAGAGGCCGCGG-Ca- -3'
miRNA:   3'- -UUGaCCUC--------CCGUCUCCGGUGCCaGaa -5'
29088 5' -60.2 NC_006146.1 + 116754 0.67 0.625943
Target:  5'- gAGgaGGAGGGCAGGGGggccgcuacuacuCCACGGa--- -3'
miRNA:   3'- -UUgaCCUCCCGUCUCC-------------GGUGCCagaa -5'
29088 5' -60.2 NC_006146.1 + 39757 0.67 0.616831
Target:  5'- cGGCUGGA-GGCuGGGGCUugGaGUCa- -3'
miRNA:   3'- -UUGACCUcCCGuCUCCGGugC-CAGaa -5'
29088 5' -60.2 NC_006146.1 + 118048 0.67 0.606717
Target:  5'- -cCUGGAgcccccGGGCGGGGGCgGCGG-Cg- -3'
miRNA:   3'- uuGACCU------CCCGUCUCCGgUGCCaGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.