miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29089 3' -58 NC_006146.1 + 69708 0.66 0.879566
Target:  5'- gCUgaGGGAGAagacCAGcGuuuCAAGGGCCAg -3'
miRNA:   3'- gGAggCCCUCUa---GUC-Cu--GUUCCCGGU- -5'
29089 3' -58 NC_006146.1 + 52973 0.66 0.879566
Target:  5'- cCCUCCGcGGGG--CGGGGCGGGcgucucgaGGCCc -3'
miRNA:   3'- -GGAGGC-CCUCuaGUCCUGUUC--------CCGGu -5'
29089 3' -58 NC_006146.1 + 107094 0.66 0.879566
Target:  5'- --gCCGGGGGAgUGGGugGgucugggaaGGGGCCu -3'
miRNA:   3'- ggaGGCCCUCUaGUCCugU---------UCCCGGu -5'
29089 3' -58 NC_006146.1 + 27365 0.66 0.879566
Target:  5'- --gCCGGGGGGcgUCuGGACAgcagcaaccGGGGCaCAg -3'
miRNA:   3'- ggaGGCCCUCU--AGuCCUGU---------UCCCG-GU- -5'
29089 3' -58 NC_006146.1 + 52079 0.66 0.872551
Target:  5'- ---aCGGGAGggCugcGGuCGGGGGCCGg -3'
miRNA:   3'- ggagGCCCUCuaGu--CCuGUUCCCGGU- -5'
29089 3' -58 NC_006146.1 + 34057 0.66 0.872551
Target:  5'- gCCggCCGGGGGuccCGuGGCAcGGGGCCGg -3'
miRNA:   3'- -GGa-GGCCCUCua-GUcCUGU-UCCCGGU- -5'
29089 3' -58 NC_006146.1 + 41020 0.66 0.872551
Target:  5'- --gCCGGGcgucAGAgccgUGGGAgGAGGGCCu -3'
miRNA:   3'- ggaGGCCC----UCUa---GUCCUgUUCCCGGu -5'
29089 3' -58 NC_006146.1 + 53936 0.66 0.872551
Target:  5'- gCUCCucGAGGUCcGGACGcaGGGGCUc -3'
miRNA:   3'- gGAGGccCUCUAGuCCUGU--UCCCGGu -5'
29089 3' -58 NC_006146.1 + 26095 0.66 0.872551
Target:  5'- --gCCGGGAGGggAGGcACGGaGGCCAc -3'
miRNA:   3'- ggaGGCCCUCUagUCC-UGUUcCCGGU- -5'
29089 3' -58 NC_006146.1 + 125173 0.66 0.872551
Target:  5'- aCUCUGGGccAGGUCAGGGuCGu-GGCCc -3'
miRNA:   3'- gGAGGCCC--UCUAGUCCU-GUucCCGGu -5'
29089 3' -58 NC_006146.1 + 40052 0.66 0.870406
Target:  5'- aCUCCGGcGuGuccgUAGGACAgcgucucccggcggAGGGCCu -3'
miRNA:   3'- gGAGGCC-CuCua--GUCCUGU--------------UCCCGGu -5'
29089 3' -58 NC_006146.1 + 137029 0.66 0.865331
Target:  5'- aCC-CCGGGgaGGAggcCGGGugG-GGGCCu -3'
miRNA:   3'- -GGaGGCCC--UCUa--GUCCugUuCCCGGu -5'
29089 3' -58 NC_006146.1 + 23126 0.66 0.865331
Target:  5'- uCUUCCuGGGAGAggcCGGGAgCcuGGGCUu -3'
miRNA:   3'- -GGAGG-CCCUCUa--GUCCU-GuuCCCGGu -5'
29089 3' -58 NC_006146.1 + 162363 0.66 0.865331
Target:  5'- gCUCCccagauaguacaGGGug--CAGGACGGGGGCUu -3'
miRNA:   3'- gGAGG------------CCCucuaGUCCUGUUCCCGGu -5'
29089 3' -58 NC_006146.1 + 114333 0.66 0.865331
Target:  5'- cCCggCCGccccugacGGAGGU--GGACGGGGGCCu -3'
miRNA:   3'- -GGa-GGC--------CCUCUAguCCUGUUCCCGGu -5'
29089 3' -58 NC_006146.1 + 169360 0.66 0.865331
Target:  5'- gCCUggCGGGGGAgagggggCAGGGCuggcgccGGGCCGc -3'
miRNA:   3'- -GGAg-GCCCUCUa------GUCCUGuu-----CCCGGU- -5'
29089 3' -58 NC_006146.1 + 168428 0.66 0.865331
Target:  5'- gCCUggCGGGGGAgagggggCAGGGCuggcgccGGGCCGc -3'
miRNA:   3'- -GGAg-GCCCUCUa------GUCCUGuu-----CCCGGU- -5'
29089 3' -58 NC_006146.1 + 170291 0.66 0.865331
Target:  5'- gCCUggCGGGGGAgagggggCAGGGCuggcgccGGGCCGc -3'
miRNA:   3'- -GGAg-GCCCUCUa------GUCCUGuu-----CCCGGU- -5'
29089 3' -58 NC_006146.1 + 167496 0.66 0.865331
Target:  5'- gCCUggCGGGGGAgagggggCAGGGCuggcgccGGGCCGc -3'
miRNA:   3'- -GGAg-GCCCUCUa------GUCCUGuu-----CCCGGU- -5'
29089 3' -58 NC_006146.1 + 170646 0.66 0.865331
Target:  5'- cCCUCaCGGGuggcgcgcAGAUCGGcGCGGGggaGGCCAg -3'
miRNA:   3'- -GGAG-GCCC--------UCUAGUCcUGUUC---CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.