miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29089 5' -63.7 NC_006146.1 + 120492 0.66 0.636635
Target:  5'- --uGCCUGCCGuCCCuggCGGCCgaggacgcgagccgCGUGGAu -3'
miRNA:   3'- gagUGGGCGGU-GGG---GCCGGa-------------GCACCU- -5'
29089 5' -63.7 NC_006146.1 + 33310 0.66 0.632793
Target:  5'- -gCACCCGgC-CCCCGGCC-CGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 159154 0.66 0.632793
Target:  5'- uCUC-CuuGCCcuGCCCCGGUCgUCuUGGAc -3'
miRNA:   3'- -GAGuGggCGG--UGGGGCCGG-AGcACCU- -5'
29089 5' -63.7 NC_006146.1 + 13552 0.66 0.632793
Target:  5'- gUC-CCCGCC-CgCCCGGCCagagacucucccUCGcGGAc -3'
miRNA:   3'- gAGuGGGCGGuG-GGGCCGG------------AGCaCCU- -5'
29089 5' -63.7 NC_006146.1 + 19708 0.66 0.632793
Target:  5'- gUC-CCCGCC-CgCCCGGCCagagacucucccUCGcGGAc -3'
miRNA:   3'- gAGuGGGCGGuG-GGGCCGG------------AGCaCCU- -5'
29089 5' -63.7 NC_006146.1 + 22786 0.66 0.632793
Target:  5'- gUC-CCCGCC-CgCCCGGCCagagacucucccUCGcGGAc -3'
miRNA:   3'- gAGuGGGCGGuG-GGGCCGG------------AGCaCCU- -5'
29089 5' -63.7 NC_006146.1 + 16630 0.66 0.632793
Target:  5'- gUC-CCCGCC-CgCCCGGCCagagacucucccUCGcGGAc -3'
miRNA:   3'- gAGuGGGCGGuG-GGGCCGG------------AGCaCCU- -5'
29089 5' -63.7 NC_006146.1 + 25864 0.66 0.632793
Target:  5'- gUC-CCCGCC-CgCCCGGCCagagacucucccUCGcGGAc -3'
miRNA:   3'- gAGuGGGCGGuG-GGGCCGG------------AGCaCCU- -5'
29089 5' -63.7 NC_006146.1 + 40178 0.66 0.631832
Target:  5'- --aGCCCGCCGCCCU--CCUCGUccuccucGGGc -3'
miRNA:   3'- gagUGGGCGGUGGGGccGGAGCA-------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34517 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34424 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34331 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34796 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34889 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 34981 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 35074 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 35167 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 35260 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 35539 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5'
29089 5' -63.7 NC_006146.1 + 35632 0.66 0.623187
Target:  5'- -gCACCCGgC-CCCCGGCCcCGagcuccaGGAc -3'
miRNA:   3'- gaGUGGGCgGuGGGGCCGGaGCa------CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.