Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2909 | 5' | -51.7 | NC_001493.1 | + | 29777 | 0.66 | 0.982681 |
Target: 5'- cGcAGGCGGAGCaGAUCGcGAa---- -3' miRNA: 3'- aCuUCCGCCUCGaCUAGCuCUguaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 97223 | 0.66 | 0.982681 |
Target: 5'- -cGAGGUGGAGCcUGucCGGGGCAUc- -3' miRNA: 3'- acUUCCGCCUCG-ACuaGCUCUGUAac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 84135 | 0.66 | 0.982681 |
Target: 5'- aUGGAGGCcggGGAGUUucgCGGGGCGUUu -3' miRNA: 3'- -ACUUCCG---CCUCGAcuaGCUCUGUAAc -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 99231 | 0.66 | 0.980547 |
Target: 5'- -cAAGGCcggaacGGAGCUGGUgaCGAGACucgGUUGc -3' miRNA: 3'- acUUCCG------CCUCGACUA--GCUCUG---UAAC- -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 91689 | 0.66 | 0.982681 |
Target: 5'- cGAGGGgGGAGCaGGUgGAGGa---- -3' miRNA: 3'- aCUUCCgCCUCGaCUAgCUCUguaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 89553 | 0.67 | 0.966853 |
Target: 5'- gGAAGGgGGGGUUGGUccgcacggucaCGAGACc--- -3' miRNA: 3'- aCUUCCgCCUCGACUA-----------GCUCUGuaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 9866 | 0.67 | 0.966853 |
Target: 5'- cGGAGGCccuauugauGGAGCcGGUCGAGccGCAg-- -3' miRNA: 3'- aCUUCCG---------CCUCGaCUAGCUC--UGUaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 125420 | 0.67 | 0.966853 |
Target: 5'- cGGAGGCccuauugauGGAGCcGGUCGAGccGCAg-- -3' miRNA: 3'- aCUUCCG---------CCUCGaCUAGCUC--UGUaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 128256 | 0.67 | 0.970022 |
Target: 5'- gUGAGGGgGGAGagagaUGGgccagUGAGACcgUGa -3' miRNA: 3'- -ACUUCCgCCUCg----ACUa----GCUCUGuaAC- -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 57651 | 0.68 | 0.950536 |
Target: 5'- cGAGGGCGG-GCUGGccgcguucgaugaaUCGAuGAUAUg- -3' miRNA: 3'- aCUUCCGCCuCGACU--------------AGCU-CUGUAac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 31923 | 0.68 | 0.938435 |
Target: 5'- gGggGGUGGAGaCccgcgcuccgugaugGAUCGAGACGc-- -3' miRNA: 3'- aCuuCCGCCUC-Ga--------------CUAGCUCUGUaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 38007 | 0.68 | 0.947448 |
Target: 5'- aUGggGGCGa---UGAUCGGGGCcgUGu -3' miRNA: 3'- -ACuuCCGCcucgACUAGCUCUGuaAC- -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 102482 | 0.68 | 0.937935 |
Target: 5'- gGggGGaguguugGGAGCUGAcCGAGACc--- -3' miRNA: 3'- aCuuCCg------CCUCGACUaGCUCUGuaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 65993 | 0.69 | 0.915792 |
Target: 5'- gGggGGUGGGGCguucGUCgGGGACGUg- -3' miRNA: 3'- aCuuCCGCCUCGac--UAG-CUCUGUAac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 90066 | 0.7 | 0.882314 |
Target: 5'- aGAGGGUGGuAGCcgaccuguUGAUCGAGugGg-- -3' miRNA: 3'- aCUUCCGCC-UCG--------ACUAGCUCugUaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 45515 | 0.7 | 0.896462 |
Target: 5'- cGAAGGCGGAGCgcauuGUCGAugaaccacuuGACAc-- -3' miRNA: 3'- aCUUCCGCCUCGac---UAGCU----------CUGUaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 88474 | 0.7 | 0.889512 |
Target: 5'- cGGAGGCGGAcggGgUGAUCGGGcccACGUa- -3' miRNA: 3'- aCUUCCGCCU---CgACUAGCUC---UGUAac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 102472 | 0.7 | 0.867196 |
Target: 5'- gGAAGGUGGGGCcucggcgGGUCGGGGgGUc- -3' miRNA: 3'- aCUUCCGCCUCGa------CUAGCUCUgUAac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 74620 | 0.74 | 0.7082 |
Target: 5'- gGGAGGCGGGGgUGA-CGGGACu--- -3' miRNA: 3'- aCUUCCGCCUCgACUaGCUCUGuaac -5' |
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2909 | 5' | -51.7 | NC_001493.1 | + | 36729 | 1.1 | 0.005353 |
Target: 5'- cUGAAGGCGGAGCUGAUCGAGACAUUGg -3' miRNA: 3'- -ACUUCCGCCUCGACUAGCUCUGUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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