miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 5' -54.1 NC_006146.1 + 2943 0.66 0.9671
Target:  5'- gCUGGGAgUCaucagacaccaGGCGCUGGA-CaCCGCGa -3'
miRNA:   3'- -GACCUUgAG-----------CUGCGACCUaGaGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 5066 0.66 0.963875
Target:  5'- -cGGGGCUgGcCGUUGGAggcgUCCACGc -3'
miRNA:   3'- gaCCUUGAgCuGCGACCUag--AGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 24296 0.68 0.919181
Target:  5'- -gGGGGCUgGACGCUGuuucccCUCCACc -3'
miRNA:   3'- gaCCUUGAgCUGCGACcua---GAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 33238 0.69 0.888018
Target:  5'- gCUGGggUUcCGGgGgUGGGggCUCCACGa -3'
miRNA:   3'- -GACCuuGA-GCUgCgACCUa-GAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 44047 0.67 0.952893
Target:  5'- -gGGAACUCGAC-CUGGAgcgucCUCagggaACGc -3'
miRNA:   3'- gaCCUUGAGCUGcGACCUa----GAGg----UGC- -5'
29090 5' -54.1 NC_006146.1 + 49436 0.66 0.970116
Target:  5'- aUGGAcC-CGGCGUUGGcgauguacuUCUCCAUGa -3'
miRNA:   3'- gACCUuGaGCUGCGACCu--------AGAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 61833 0.7 0.8666
Target:  5'- -cGGggUgaaggUGACGCUuaauccGGAUCUCUACGu -3'
miRNA:   3'- gaCCuuGa----GCUGCGA------CCUAGAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 88870 0.69 0.888018
Target:  5'- cCUGGGGCUguUGugGCUGcaaCUCCACa -3'
miRNA:   3'- -GACCUUGA--GCugCGACcuaGAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 91107 0.67 0.948781
Target:  5'- aUGGcAACUCGACGCccg--CUCCGCc -3'
miRNA:   3'- gACC-UUGAGCUGCGaccuaGAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 104560 0.67 0.948781
Target:  5'- -aGGGGCUCGAUGCUGcuGUCauUCCAg- -3'
miRNA:   3'- gaCCUUGAGCUGCGACc-UAG--AGGUgc -5'
29090 5' -54.1 NC_006146.1 + 104703 0.67 0.939861
Target:  5'- cCUGGAuCUCGuCGcCUGGGUCagcUCCuGCGu -3'
miRNA:   3'- -GACCUuGAGCuGC-GACCUAG---AGG-UGC- -5'
29090 5' -54.1 NC_006146.1 + 104977 0.65 0.975292
Target:  5'- cCUGGGGCUCccgagggGGCuCUGGGgagacacucaacUCUCCACu -3'
miRNA:   3'- -GACCUUGAG-------CUGcGACCU------------AGAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 114604 0.67 0.956776
Target:  5'- cCUGGGccACcucgaggCGGCGCUGGAcgUCCugGc -3'
miRNA:   3'- -GACCU--UGa------GCUGCGACCUagAGGugC- -5'
29090 5' -54.1 NC_006146.1 + 120536 1.1 0.004343
Target:  5'- aCUGGAACUCGACGCUGGAUCUCCACGg -3'
miRNA:   3'- -GACCUUGAGCUGCGACCUAGAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 123362 0.68 0.929997
Target:  5'- -gGGAGCUCuGGCGCUGGccgggggCcCCGCa -3'
miRNA:   3'- gaCCUUGAG-CUGCGACCua-----GaGGUGc -5'
29090 5' -54.1 NC_006146.1 + 123449 0.7 0.843293
Target:  5'- cCUGGAGCUCGAgaGCaUGGcccagaaCUCCAUGg -3'
miRNA:   3'- -GACCUUGAGCUg-CG-ACCua-----GAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 124500 0.7 0.851262
Target:  5'- -cGGGACUCGGC-CUGG-UCUCgGCc -3'
miRNA:   3'- gaCCUUGAGCUGcGACCuAGAGgUGc -5'
29090 5' -54.1 NC_006146.1 + 132357 0.73 0.725208
Target:  5'- -aGGAACUgGACGgggucCUGcGUCUCCACGg -3'
miRNA:   3'- gaCCUUGAgCUGC-----GACcUAGAGGUGC- -5'
29090 5' -54.1 NC_006146.1 + 135174 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135267 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.