miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29090 5' -54.1 NC_006146.1 + 136939 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135824 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135731 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135639 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 114604 0.67 0.956776
Target:  5'- cCUGGGccACcucgaggCGGCGCUGGAcgUCCugGc -3'
miRNA:   3'- -GACCU--UGa------GCUGCGACCUagAGGugC- -5'
29090 5' -54.1 NC_006146.1 + 137497 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 136010 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135174 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135267 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135360 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135453 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 135546 0.67 0.956776
Target:  5'- cCUGGAGCUCGGgGCcGGGgg-CCGgGu -3'
miRNA:   3'- -GACCUUGAGCUgCGaCCUagaGGUgC- -5'
29090 5' -54.1 NC_006146.1 + 44047 0.67 0.952893
Target:  5'- -gGGAACUCGAC-CUGGAgcgucCUCagggaACGc -3'
miRNA:   3'- gaCCUUGAGCUGcGACCUa----GAGg----UGC- -5'
29090 5' -54.1 NC_006146.1 + 104560 0.67 0.948781
Target:  5'- -aGGGGCUCGAUGCUGcuGUCauUCCAg- -3'
miRNA:   3'- gaCCUUGAGCUGCGACc-UAG--AGGUgc -5'
29090 5' -54.1 NC_006146.1 + 91107 0.67 0.948781
Target:  5'- aUGGcAACUCGACGCccg--CUCCGCc -3'
miRNA:   3'- gACC-UUGAGCUGCGaccuaGAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 104703 0.67 0.939861
Target:  5'- cCUGGAuCUCGuCGcCUGGGUCagcUCCuGCGu -3'
miRNA:   3'- -GACCUuGAGCuGC-GACCUAG---AGG-UGC- -5'
29090 5' -54.1 NC_006146.1 + 156925 0.68 0.935047
Target:  5'- cCUGGGuggCGGCGCUGacGggCUCCGCu -3'
miRNA:   3'- -GACCUugaGCUGCGAC--CuaGAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 123362 0.68 0.929997
Target:  5'- -gGGAGCUCuGGCGCUGGccgggggCcCCGCa -3'
miRNA:   3'- gaCCUUGAG-CUGCGACCua-----GaGGUGc -5'
29090 5' -54.1 NC_006146.1 + 24296 0.68 0.919181
Target:  5'- -gGGGGCUgGACGCUGuuucccCUCCACc -3'
miRNA:   3'- gaCCUUGAgCUGCGACcua---GAGGUGc -5'
29090 5' -54.1 NC_006146.1 + 33238 0.69 0.888018
Target:  5'- gCUGGggUUcCGGgGgUGGGggCUCCACGa -3'
miRNA:   3'- -GACCuuGA-GCUgCgACCUa-GAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.