miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29091 5' -49.8 NC_006146.1 + 68191 0.66 0.998112
Target:  5'- aGGACGCGGGcgcagcggCUCCgGGAggUCAGAc -3'
miRNA:   3'- cUCUGCGCUUuua-----GAGGgCCU--AGUUU- -5'
29091 5' -49.8 NC_006146.1 + 153094 0.66 0.998112
Target:  5'- gGGGGCGCGAGuagcacaugCUCUCGGAgccCGGGa -3'
miRNA:   3'- -CUCUGCGCUUuua------GAGGGCCUa--GUUU- -5'
29091 5' -49.8 NC_006146.1 + 71462 0.66 0.99774
Target:  5'- cGAGGaGCGAGGGccucaugCUCCUGGAUCu-- -3'
miRNA:   3'- -CUCUgCGCUUUUa------GAGGGCCUAGuuu -5'
29091 5' -49.8 NC_006146.1 + 51698 0.66 0.996811
Target:  5'- cGGGugGCGg----CUCCCGGccGUCAu- -3'
miRNA:   3'- -CUCugCGCuuuuaGAGGGCC--UAGUuu -5'
29091 5' -49.8 NC_006146.1 + 26271 0.66 0.996811
Target:  5'- cGGGugGCGGAAuuagCCUGGGUgGAGg -3'
miRNA:   3'- -CUCugCGCUUUuagaGGGCCUAgUUU- -5'
29091 5' -49.8 NC_006146.1 + 93733 0.66 0.996811
Target:  5'- cGGAgGUGAAuucgauguUgUCCCGGAUCAGc -3'
miRNA:   3'- cUCUgCGCUUuu------AgAGGGCCUAGUUu -5'
29091 5' -49.8 NC_006146.1 + 144270 0.66 0.996592
Target:  5'- uGAGAUGCGggGAgaccucagaggcaCUCUCGGAUguGGg -3'
miRNA:   3'- -CUCUGCGCuuUUa------------GAGGGCCUAguUU- -5'
29091 5' -49.8 NC_006146.1 + 121815 0.66 0.996239
Target:  5'- gGAGACggccgcugcgGUGAAucugCUCCCGGGUCu-- -3'
miRNA:   3'- -CUCUG----------CGCUUuua-GAGGGCCUAGuuu -5'
29091 5' -49.8 NC_006146.1 + 140142 0.67 0.994843
Target:  5'- uGGugGCGggGGUgC-CCCGGGUaCAGu -3'
miRNA:   3'- cUCugCGCuuUUA-GaGGGCCUA-GUUu -5'
29091 5' -49.8 NC_006146.1 + 128845 0.67 0.994843
Target:  5'- -uGuCGCGA--AUCUCCCuaGGGUCGAGc -3'
miRNA:   3'- cuCuGCGCUuuUAGAGGG--CCUAGUUU- -5'
29091 5' -49.8 NC_006146.1 + 4308 0.67 0.994003
Target:  5'- uGAGACGCGggGAUggcaagaUCCagggCGGGUCGc- -3'
miRNA:   3'- -CUCUGCGCuuUUAg------AGG----GCCUAGUuu -5'
29091 5' -49.8 NC_006146.1 + 99285 0.67 0.993055
Target:  5'- cAGACGUGGcugggguuAAUCUCCCGccuGGUCAGGg -3'
miRNA:   3'- cUCUGCGCUu-------UUAGAGGGC---CUAGUUU- -5'
29091 5' -49.8 NC_006146.1 + 130693 0.67 0.991991
Target:  5'- aGGGGCGCG-AGAUCUgggCGGAUCAu- -3'
miRNA:   3'- -CUCUGCGCuUUUAGAgg-GCCUAGUuu -5'
29091 5' -49.8 NC_006146.1 + 53767 0.68 0.988009
Target:  5'- -cGGCggGCGGAGGUCUCgCCGGA-CGAGg -3'
miRNA:   3'- cuCUG--CGCUUUUAGAG-GGCCUaGUUU- -5'
29091 5' -49.8 NC_006146.1 + 44950 0.69 0.972905
Target:  5'- aGGGGCGCGggGAggcCCCGGGggacUCGAc -3'
miRNA:   3'- -CUCUGCGCuuUUagaGGGCCU----AGUUu -5'
29091 5' -49.8 NC_006146.1 + 127494 0.69 0.972905
Target:  5'- gGAGACgGCGggGGUCgcagCCGGggCAGAg -3'
miRNA:   3'- -CUCUG-CGCuuUUAGag--GGCCuaGUUU- -5'
29091 5' -49.8 NC_006146.1 + 28391 0.7 0.969951
Target:  5'- gGAGugGagGggGAUCgCCCGGGUCu-- -3'
miRNA:   3'- -CUCugCg-CuuUUAGaGGGCCUAGuuu -5'
29091 5' -49.8 NC_006146.1 + 19157 0.7 0.969951
Target:  5'- gGAGugGagGggGAUCgCCCGGGUCu-- -3'
miRNA:   3'- -CUCugCg-CuuUUAGaGGGCCUAGuuu -5'
29091 5' -49.8 NC_006146.1 + 16079 0.7 0.969951
Target:  5'- gGAGugGagGggGAUCgCCCGGGUCu-- -3'
miRNA:   3'- -CUCugCg-CuuUUAGaGGGCCUAGuuu -5'
29091 5' -49.8 NC_006146.1 + 13001 0.7 0.969951
Target:  5'- gGAGugGagGggGAUCgCCCGGGUCu-- -3'
miRNA:   3'- -CUCugCg-CuuUUAGaGGGCCUAGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.