miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 126414 0.66 0.935141
Target:  5'- --cCCGGGgucgcgaGCacgGCACAGGCcacGCUUCCu -3'
miRNA:   3'- cuaGGUCCa------CGg--CGUGUUCG---CGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 90440 0.66 0.935141
Target:  5'- -uUCCAGGguuuCCaggGCACAGGCcaCUUCCa -3'
miRNA:   3'- cuAGGUCCac--GG---CGUGUUCGc-GAAGG- -5'
29092 3' -55.5 NC_006146.1 + 54010 0.66 0.930073
Target:  5'- --cUCAGG-GCCgGCACcagguGGCGCcUCCg -3'
miRNA:   3'- cuaGGUCCaCGG-CGUGu----UCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 39187 0.66 0.930073
Target:  5'- -cUCCAGGUGCCcaucaGCAGGcCGCa--- -3'
miRNA:   3'- cuAGGUCCACGGcg---UGUUC-GCGaagg -5'
29092 3' -55.5 NC_006146.1 + 167735 0.66 0.930073
Target:  5'- aGAUCgCAGGUGCUcgaucaggGCGCAGGgGCc--- -3'
miRNA:   3'- -CUAG-GUCCACGG--------CGUGUUCgCGaagg -5'
29092 3' -55.5 NC_006146.1 + 44386 0.66 0.924764
Target:  5'- --cCCGGGgggcgugugggGCCGgGCAcGGCGcCUUCCu -3'
miRNA:   3'- cuaGGUCCa----------CGGCgUGU-UCGC-GAAGG- -5'
29092 3' -55.5 NC_006146.1 + 130452 0.66 0.924764
Target:  5'- --aCCAGGccauUGCCGCACccgccuacgGGGcCGCUgCCg -3'
miRNA:   3'- cuaGGUCC----ACGGCGUG---------UUC-GCGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 120802 0.66 0.919215
Target:  5'- cGGUCCGcGUgGCCGgACAAGCGgggCCg -3'
miRNA:   3'- -CUAGGUcCA-CGGCgUGUUCGCgaaGG- -5'
29092 3' -55.5 NC_006146.1 + 13557 0.66 0.913427
Target:  5'- gGcgCCGGGcgccggGCUGCGCAAGCaggccggggGCUcaUCCa -3'
miRNA:   3'- -CuaGGUCCa-----CGGCGUGUUCG---------CGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 73136 0.66 0.913427
Target:  5'- aGUCCAGGuUGuuGCACuugGAGUGCa--- -3'
miRNA:   3'- cUAGGUCC-ACggCGUG---UUCGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 110500 0.66 0.913427
Target:  5'- aGGUCCAGGagGgUGCAgauguucucCAGGCGCUgcaCCu -3'
miRNA:   3'- -CUAGGUCCa-CgGCGU---------GUUCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 151945 0.67 0.9074
Target:  5'- -cUCUAGGgGCCGCu--GGCGCcaCCa -3'
miRNA:   3'- cuAGGUCCaCGGCGuguUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 33961 0.67 0.9074
Target:  5'- uGGUCCGGGUGggcgugguCCGCugGGucCGCUggUCCg -3'
miRNA:   3'- -CUAGGUCCAC--------GGCGugUUc-GCGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 13100 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 19256 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 25412 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 33233 0.67 0.901137
Target:  5'- --gCCGGGUgGCCGC-CG-GCGggUCCg -3'
miRNA:   3'- cuaGGUCCA-CGGCGuGUuCGCgaAGG- -5'
29092 3' -55.5 NC_006146.1 + 22334 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 28490 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 108408 0.67 0.901137
Target:  5'- aGggCCAGGUGCUGCugGcacgagaacauGGCGUUa-- -3'
miRNA:   3'- -CuaGGUCCACGGCGugU-----------UCGCGAagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.