miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 120823 1.12 0.002228
Target:  5'- aGAUCCAGGUGCCGCACAAGCGCUUCCu -3'
miRNA:   3'- -CUAGGUCCACGGCGUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 70212 0.81 0.236781
Target:  5'- aGcgCCGGGUGCCGagggcCGCGAGCGUUUCUa -3'
miRNA:   3'- -CuaGGUCCACGGC-----GUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 42739 0.77 0.384525
Target:  5'- gGAUCCGGGcggugcUGCCGCACAA-CGCggCCu -3'
miRNA:   3'- -CUAGGUCC------ACGGCGUGUUcGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 155710 0.76 0.417912
Target:  5'- -uUCgAGGUgaaggcgGCCGCGCAgucggccuucAGCGCUUCCa -3'
miRNA:   3'- cuAGgUCCA-------CGGCGUGU----------UCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 49591 0.74 0.502159
Target:  5'- -cUCCAGGaUGaCGCGgAGGCGCUUCUc -3'
miRNA:   3'- cuAGGUCC-ACgGCGUgUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 40981 0.74 0.541498
Target:  5'- --gCCGuGGUGCCGCGCcGGCGCc-CCa -3'
miRNA:   3'- cuaGGU-CCACGGCGUGuUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 85970 0.72 0.663701
Target:  5'- --aCCAGGUGCCGUuccaACAGGC-CUUUg -3'
miRNA:   3'- cuaGGUCCACGGCG----UGUUCGcGAAGg -5'
29092 3' -55.5 NC_006146.1 + 123300 0.71 0.714304
Target:  5'- cGAUCCcuGGcgGCCGC-CGAGUGgaUCCg -3'
miRNA:   3'- -CUAGGu-CCa-CGGCGuGUUCGCgaAGG- -5'
29092 3' -55.5 NC_006146.1 + 55186 0.7 0.72425
Target:  5'- --cCCAGGcugcgGCCGCggcggGCGAGCGUcUCCu -3'
miRNA:   3'- cuaGGUCCa----CGGCG-----UGUUCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 43741 0.7 0.72425
Target:  5'- cGggCCAGGUgGUCGCGCAuGaCGCcgUCCa -3'
miRNA:   3'- -CuaGGUCCA-CGGCGUGUuC-GCGa-AGG- -5'
29092 3' -55.5 NC_006146.1 + 67145 0.7 0.743894
Target:  5'- --aCCGGGaGCCGCugGccgcuccugAGCGCggcgUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGugU---------UCGCGa---AGG- -5'
29092 3' -55.5 NC_006146.1 + 99209 0.7 0.753573
Target:  5'- -cUCCAGGgagGCCGCGgCcucGGCGCgcCCg -3'
miRNA:   3'- cuAGGUCCa--CGGCGU-Gu--UCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 115078 0.7 0.763145
Target:  5'- --gCCGGGUGCC-CACccAGGCGCUggCUg -3'
miRNA:   3'- cuaGGUCCACGGcGUG--UUCGCGAa-GG- -5'
29092 3' -55.5 NC_006146.1 + 153280 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 150202 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 147124 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 144046 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 156358 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 43242 0.69 0.817803
Target:  5'- -uUUgGGGUGCCucgGCGCcAGCGCggCCu -3'
miRNA:   3'- cuAGgUCCACGG---CGUGuUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 39097 0.69 0.817803
Target:  5'- --gCCAGG-GCCauuucCGCGAGCGCaUCCc -3'
miRNA:   3'- cuaGGUCCaCGGc----GUGUUCGCGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.