miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 22334 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 25412 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 108408 0.67 0.901137
Target:  5'- aGggCCAGGUGCUGCugGcacgagaacauGGCGUUa-- -3'
miRNA:   3'- -CuaGGUCCACGGCGugU-----------UCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 159726 0.67 0.894641
Target:  5'- --aCCAGGUuccccCCGUAgAGGCGCU-CCu -3'
miRNA:   3'- cuaGGUCCAc----GGCGUgUUCGCGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 24419 0.67 0.887228
Target:  5'- -uUCCAGGagGCCGCcuGCAaccaaugGGUGCUgcgCCc -3'
miRNA:   3'- cuAGGUCCa-CGGCG--UGU-------UCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 9128 0.67 0.880959
Target:  5'- aGAUUCAGGcccCCGCcCAGGCGCccCCu -3'
miRNA:   3'- -CUAGGUCCac-GGCGuGUUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 53905 0.67 0.873783
Target:  5'- aGGUCCAGG-GcCCGCucCAcGCGCUcguugagcUCCu -3'
miRNA:   3'- -CUAGGUCCaC-GGCGu-GUuCGCGA--------AGG- -5'
29092 3' -55.5 NC_006146.1 + 111147 0.67 0.873783
Target:  5'- aAUCgCAGGUagcGCCGCuuCAGGCGCUc-- -3'
miRNA:   3'- cUAG-GUCCA---CGGCGu-GUUCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 9643 0.68 0.866389
Target:  5'- --cCCAGGcgcaUGCgGCACAGGUaGCUgCCg -3'
miRNA:   3'- cuaGGUCC----ACGgCGUGUUCG-CGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 170648 0.68 0.866389
Target:  5'- -cUCaCGGGUGgCGCGCAgaucGGCGCgggggaggCCa -3'
miRNA:   3'- cuAG-GUCCACgGCGUGU----UCGCGaa------GG- -5'
29092 3' -55.5 NC_006146.1 + 95974 0.68 0.858783
Target:  5'- --aCCGGGUGCUaCACAGcCGCUccaUCCu -3'
miRNA:   3'- cuaGGUCCACGGcGUGUUcGCGA---AGG- -5'
29092 3' -55.5 NC_006146.1 + 2734 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 870 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 1802 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 3666 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 137923 0.68 0.850971
Target:  5'- -uUCCGGGggcaGCCGCGacccAGCGCgccCCg -3'
miRNA:   3'- cuAGGUCCa---CGGCGUgu--UCGCGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 126791 0.68 0.842961
Target:  5'- cAUCCGGGUucGgCGC-CGAGCGCgcggCCc -3'
miRNA:   3'- cUAGGUCCA--CgGCGuGUUCGCGaa--GG- -5'
29092 3' -55.5 NC_006146.1 + 49377 0.68 0.842961
Target:  5'- cGAUCUgcuggauGGUGUCGCGCAGGCGgaUg- -3'
miRNA:   3'- -CUAGGu------CCACGGCGUGUUCGCgaAgg -5'
29092 3' -55.5 NC_006146.1 + 163213 0.68 0.842961
Target:  5'- aGAggagCCGGGcagGCCGUagGCAggguAGCGCUgcUCCa -3'
miRNA:   3'- -CUa---GGUCCa--CGGCG--UGU----UCGCGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 146822 0.68 0.834757
Target:  5'- --cCCAGGcgagGCCGCGCcAGCGUagagCCc -3'
miRNA:   3'- cuaGGUCCa---CGGCGUGuUCGCGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.