miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 870 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 1802 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 2734 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 3666 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 9128 0.67 0.880959
Target:  5'- aGAUUCAGGcccCCGCcCAGGCGCccCCu -3'
miRNA:   3'- -CUAGGUCCac-GGCGuGUUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 9643 0.68 0.866389
Target:  5'- --cCCAGGcgcaUGCgGCACAGGUaGCUgCCg -3'
miRNA:   3'- cuaGGUCC----ACGgCGUGUUCG-CGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 13100 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 13557 0.66 0.913427
Target:  5'- gGcgCCGGGcgccggGCUGCGCAAGCaggccggggGCUcaUCCa -3'
miRNA:   3'- -CuaGGUCCa-----CGGCGUGUUCG---------CGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 16178 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 19256 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 22334 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 24419 0.67 0.887228
Target:  5'- -uUCCAGGagGCCGCcuGCAaccaaugGGUGCUgcgCCc -3'
miRNA:   3'- cuAGGUCCa-CGGCG--UGU-------UCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 25412 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 28490 0.67 0.901137
Target:  5'- --cCCAGG-GUCGC-CAGGCGgggUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGuGUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 33233 0.67 0.901137
Target:  5'- --gCCGGGUgGCCGC-CG-GCGggUCCg -3'
miRNA:   3'- cuaGGUCCA-CGGCGuGUuCGCgaAGG- -5'
29092 3' -55.5 NC_006146.1 + 33961 0.67 0.9074
Target:  5'- uGGUCCGGGUGggcgugguCCGCugGGucCGCUggUCCg -3'
miRNA:   3'- -CUAGGUCCAC--------GGCGugUUc-GCGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 39097 0.69 0.817803
Target:  5'- --gCCAGG-GCCauuucCGCGAGCGCaUCCc -3'
miRNA:   3'- cuaGGUCCaCGGc----GUGUUCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 39187 0.66 0.930073
Target:  5'- -cUCCAGGUGCCcaucaGCAGGcCGCa--- -3'
miRNA:   3'- cuAGGUCCACGGcg---UGUUC-GCGaagg -5'
29092 3' -55.5 NC_006146.1 + 40981 0.74 0.541498
Target:  5'- --gCCGuGGUGCCGCGCcGGCGCc-CCa -3'
miRNA:   3'- cuaGGU-CCACGGCGUGuUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 42739 0.77 0.384525
Target:  5'- gGAUCCGGGcggugcUGCCGCACAA-CGCggCCu -3'
miRNA:   3'- -CUAGGUCC------ACGGCGUGUUcGCGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.