miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 110500 0.66 0.913427
Target:  5'- aGGUCCAGGagGgUGCAgauguucucCAGGCGCUgcaCCu -3'
miRNA:   3'- -CUAGGUCCa-CgGCGU---------GUUCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 111147 0.67 0.873783
Target:  5'- aAUCgCAGGUagcGCCGCuuCAGGCGCUc-- -3'
miRNA:   3'- cUAG-GUCCA---CGGCGu-GUUCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 115078 0.7 0.763145
Target:  5'- --gCCGGGUGCC-CACccAGGCGCUggCUg -3'
miRNA:   3'- cuaGGUCCACGGcGUG--UUCGCGAa-GG- -5'
29092 3' -55.5 NC_006146.1 + 120802 0.66 0.919215
Target:  5'- cGGUCCGcGUgGCCGgACAAGCGgggCCg -3'
miRNA:   3'- -CUAGGUcCA-CGGCgUGUUCGCgaaGG- -5'
29092 3' -55.5 NC_006146.1 + 120823 1.12 0.002228
Target:  5'- aGAUCCAGGUGCCGCACAAGCGCUUCCu -3'
miRNA:   3'- -CUAGGUCCACGGCGUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 123300 0.71 0.714304
Target:  5'- cGAUCCcuGGcgGCCGC-CGAGUGgaUCCg -3'
miRNA:   3'- -CUAGGu-CCa-CGGCGuGUUCGCgaAGG- -5'
29092 3' -55.5 NC_006146.1 + 126414 0.66 0.935141
Target:  5'- --cCCGGGgucgcgaGCacgGCACAGGCcacGCUUCCu -3'
miRNA:   3'- cuaGGUCCa------CGg--CGUGUUCG---CGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 126791 0.68 0.842961
Target:  5'- cAUCCGGGUucGgCGC-CGAGCGCgcggCCc -3'
miRNA:   3'- cUAGGUCCA--CgGCGuGUUCGCGaa--GG- -5'
29092 3' -55.5 NC_006146.1 + 130452 0.66 0.924764
Target:  5'- --aCCAGGccauUGCCGCACccgccuacgGGGcCGCUgCCg -3'
miRNA:   3'- cuaGGUCC----ACGGCGUG---------UUC-GCGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 137923 0.68 0.850971
Target:  5'- -uUCCGGGggcaGCCGCGacccAGCGCgccCCg -3'
miRNA:   3'- cuAGGUCCa---CGGCGUgu--UCGCGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 144046 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 146822 0.68 0.834757
Target:  5'- --cCCAGGcgagGCCGCGCcAGCGUagagCCc -3'
miRNA:   3'- cuaGGUCCa---CGGCGUGuUCGCGaa--GG- -5'
29092 3' -55.5 NC_006146.1 + 147124 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 150202 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 151945 0.67 0.9074
Target:  5'- -cUCUAGGgGCCGCu--GGCGCcaCCa -3'
miRNA:   3'- cuAGGUCCaCGGCGuguUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 153280 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 155710 0.76 0.417912
Target:  5'- -uUCgAGGUgaaggcgGCCGCGCAgucggccuucAGCGCUUCCa -3'
miRNA:   3'- cuAGgUCCA-------CGGCGUGU----------UCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 156358 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 159726 0.67 0.894641
Target:  5'- --aCCAGGUuccccCCGUAgAGGCGCU-CCu -3'
miRNA:   3'- cuaGGUCCAc----GGCGUgUUCGCGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 163213 0.68 0.842961
Target:  5'- aGAggagCCGGGcagGCCGUagGCAggguAGCGCUgcUCCa -3'
miRNA:   3'- -CUa---GGUCCa--CGGCG--UGU----UCGCGA--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.