miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 111147 0.67 0.873783
Target:  5'- aAUCgCAGGUagcGCCGCuuCAGGCGCUc-- -3'
miRNA:   3'- cUAG-GUCCA---CGGCGu-GUUCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 110500 0.66 0.913427
Target:  5'- aGGUCCAGGagGgUGCAgauguucucCAGGCGCUgcaCCu -3'
miRNA:   3'- -CUAGGUCCa-CgGCGU---------GUUCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 108408 0.67 0.901137
Target:  5'- aGggCCAGGUGCUGCugGcacgagaacauGGCGUUa-- -3'
miRNA:   3'- -CuaGGUCCACGGCGugU-----------UCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 99209 0.7 0.753573
Target:  5'- -cUCCAGGgagGCCGCGgCcucGGCGCgcCCg -3'
miRNA:   3'- cuAGGUCCa--CGGCGU-Gu--UCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 99097 0.67 0.901137
Target:  5'- --gCCAGGU-CCGCACGucccGCGCcugCCc -3'
miRNA:   3'- cuaGGUCCAcGGCGUGUu---CGCGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 95974 0.68 0.858783
Target:  5'- --aCCGGGUGCUaCACAGcCGCUccaUCCu -3'
miRNA:   3'- cuaGGUCCACGGcGUGUUcGCGA---AGG- -5'
29092 3' -55.5 NC_006146.1 + 90440 0.66 0.935141
Target:  5'- -uUCCAGGguuuCCaggGCACAGGCcaCUUCCa -3'
miRNA:   3'- cuAGGUCCac--GG---CGUGUUCGc-GAAGG- -5'
29092 3' -55.5 NC_006146.1 + 85970 0.72 0.663701
Target:  5'- --aCCAGGUGCCGUuccaACAGGC-CUUUg -3'
miRNA:   3'- cuaGGUCCACGGCG----UGUUCGcGAAGg -5'
29092 3' -55.5 NC_006146.1 + 73136 0.66 0.913427
Target:  5'- aGUCCAGGuUGuuGCACuugGAGUGCa--- -3'
miRNA:   3'- cUAGGUCC-ACggCGUG---UUCGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 70212 0.81 0.236781
Target:  5'- aGcgCCGGGUGCCGagggcCGCGAGCGUUUCUa -3'
miRNA:   3'- -CuaGGUCCACGGC-----GUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 69056 0.67 0.901137
Target:  5'- --cCCGuGGUGCgGCAgccCGAGCGCUcgggCCc -3'
miRNA:   3'- cuaGGU-CCACGgCGU---GUUCGCGAa---GG- -5'
29092 3' -55.5 NC_006146.1 + 67145 0.7 0.743894
Target:  5'- --aCCGGGaGCCGCugGccgcuccugAGCGCggcgUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGugU---------UCGCGa---AGG- -5'
29092 3' -55.5 NC_006146.1 + 64264 0.68 0.834757
Target:  5'- --aCCAGccgGCCGCAgCAGGCGCUg-- -3'
miRNA:   3'- cuaGGUCca-CGGCGU-GUUCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 55186 0.7 0.72425
Target:  5'- --cCCAGGcugcgGCCGCggcggGCGAGCGUcUCCu -3'
miRNA:   3'- cuaGGUCCa----CGGCG-----UGUUCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 54010 0.66 0.930073
Target:  5'- --cUCAGG-GCCgGCACcagguGGCGCcUCCg -3'
miRNA:   3'- cuaGGUCCaCGG-CGUGu----UCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 53905 0.67 0.873783
Target:  5'- aGGUCCAGG-GcCCGCucCAcGCGCUcguugagcUCCu -3'
miRNA:   3'- -CUAGGUCCaC-GGCGu-GUuCGCGA--------AGG- -5'
29092 3' -55.5 NC_006146.1 + 49591 0.74 0.502159
Target:  5'- -cUCCAGGaUGaCGCGgAGGCGCUUCUc -3'
miRNA:   3'- cuAGGUCC-ACgGCGUgUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 49377 0.68 0.842961
Target:  5'- cGAUCUgcuggauGGUGUCGCGCAGGCGgaUg- -3'
miRNA:   3'- -CUAGGu------CCACGGCGUGUUCGCgaAgg -5'
29092 3' -55.5 NC_006146.1 + 48623 0.69 0.826369
Target:  5'- --gUCGGGUGCCGUGgGGGCGggcUCCg -3'
miRNA:   3'- cuaGGUCCACGGCGUgUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 44386 0.66 0.924764
Target:  5'- --cCCGGGgggcgugugggGCCGgGCAcGGCGcCUUCCu -3'
miRNA:   3'- cuaGGUCCa----------CGGCgUGU-UCGC-GAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.