miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 120823 1.12 0.002228
Target:  5'- aGAUCCAGGUGCCGCACAAGCGCUUCCu -3'
miRNA:   3'- -CUAGGUCCACGGCGUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 95974 0.68 0.858783
Target:  5'- --aCCGGGUGCUaCACAGcCGCUccaUCCu -3'
miRNA:   3'- cuaGGUCCACGGcGUGUUcGCGA---AGG- -5'
29092 3' -55.5 NC_006146.1 + 53905 0.67 0.873783
Target:  5'- aGGUCCAGG-GcCCGCucCAcGCGCUcguugagcUCCu -3'
miRNA:   3'- -CUAGGUCCaC-GGCGu-GUuCGCGA--------AGG- -5'
29092 3' -55.5 NC_006146.1 + 90440 0.66 0.935141
Target:  5'- -uUCCAGGguuuCCaggGCACAGGCcaCUUCCa -3'
miRNA:   3'- cuAGGUCCac--GG---CGUGUUCGc-GAAGG- -5'
29092 3' -55.5 NC_006146.1 + 49591 0.74 0.502159
Target:  5'- -cUCCAGGaUGaCGCGgAGGCGCUUCUc -3'
miRNA:   3'- cuAGGUCC-ACgGCGUgUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 55186 0.7 0.72425
Target:  5'- --cCCAGGcugcgGCCGCggcggGCGAGCGUcUCCu -3'
miRNA:   3'- cuaGGUCCa----CGGCG-----UGUUCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 99209 0.7 0.753573
Target:  5'- -cUCCAGGgagGCCGCGgCcucGGCGCgcCCg -3'
miRNA:   3'- cuAGGUCCa--CGGCGU-Gu--UCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 115078 0.7 0.763145
Target:  5'- --gCCGGGUGCC-CACccAGGCGCUggCUg -3'
miRNA:   3'- cuaGGUCCACGGcGUG--UUCGCGAa-GG- -5'
29092 3' -55.5 NC_006146.1 + 48623 0.69 0.826369
Target:  5'- --gUCGGGUGCCGUGgGGGCGggcUCCg -3'
miRNA:   3'- cuaGGUCCACGGCGUgUUCGCga-AGG- -5'
29092 3' -55.5 NC_006146.1 + 137923 0.68 0.850971
Target:  5'- -uUCCGGGggcaGCCGCGacccAGCGCgccCCg -3'
miRNA:   3'- cuAGGUCCa---CGGCGUgu--UCGCGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 146822 0.68 0.834757
Target:  5'- --cCCAGGcgagGCCGCGCcAGCGUagagCCc -3'
miRNA:   3'- cuaGGUCCa---CGGCGUGuUCGCGaa--GG- -5'
29092 3' -55.5 NC_006146.1 + 43242 0.69 0.817803
Target:  5'- -uUUgGGGUGCCucgGCGCcAGCGCggCCu -3'
miRNA:   3'- cuAGgUCCACGG---CGUGuUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 70212 0.81 0.236781
Target:  5'- aGcgCCGGGUGCCGagggcCGCGAGCGUUUCUa -3'
miRNA:   3'- -CuaGGUCCACGGC-----GUGUUCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 49377 0.68 0.842961
Target:  5'- cGAUCUgcuggauGGUGUCGCGCAGGCGgaUg- -3'
miRNA:   3'- -CUAGGu------CCACGGCGUGUUCGCgaAgg -5'
29092 3' -55.5 NC_006146.1 + 42739 0.77 0.384525
Target:  5'- gGAUCCGGGcggugcUGCCGCACAA-CGCggCCu -3'
miRNA:   3'- -CUAGGUCC------ACGGCGUGUUcGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 39097 0.69 0.817803
Target:  5'- --gCCAGG-GCCauuucCGCGAGCGCaUCCc -3'
miRNA:   3'- cuaGGUCCaCGGc----GUGUUCGCGaAGG- -5'
29092 3' -55.5 NC_006146.1 + 163213 0.68 0.842961
Target:  5'- aGAggagCCGGGcagGCCGUagGCAggguAGCGCUgcUCCa -3'
miRNA:   3'- -CUa---GGUCCa--CGGCG--UGU----UCGCGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 170648 0.68 0.866389
Target:  5'- -cUCaCGGGUGgCGCGCAgaucGGCGCgggggaggCCa -3'
miRNA:   3'- cuAG-GUCCACgGCGUGU----UCGCGaa------GG- -5'
29092 3' -55.5 NC_006146.1 + 155710 0.76 0.417912
Target:  5'- -uUCgAGGUgaaggcgGCCGCGCAgucggccuucAGCGCUUCCa -3'
miRNA:   3'- cuAGgUCCA-------CGGCGUGU----------UCGCGAAGG- -5'
29092 3' -55.5 NC_006146.1 + 67145 0.7 0.743894
Target:  5'- --aCCGGGaGCCGCugGccgcuccugAGCGCggcgUCCg -3'
miRNA:   3'- cuaGGUCCaCGGCGugU---------UCGCGa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.