miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 3' -55.5 NC_006146.1 + 9643 0.68 0.866389
Target:  5'- --cCCAGGcgcaUGCgGCACAGGUaGCUgCCg -3'
miRNA:   3'- cuaGGUCC----ACGgCGUGUUCG-CGAaGG- -5'
29092 3' -55.5 NC_006146.1 + 111147 0.67 0.873783
Target:  5'- aAUCgCAGGUagcGCCGCuuCAGGCGCUc-- -3'
miRNA:   3'- cUAG-GUCCA---CGGCGu-GUUCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 24419 0.67 0.887228
Target:  5'- -uUCCAGGagGCCGCcuGCAaccaaugGGUGCUgcgCCc -3'
miRNA:   3'- cuAGGUCCa-CGGCG--UGU-------UCGCGAa--GG- -5'
29092 3' -55.5 NC_006146.1 + 108408 0.67 0.901137
Target:  5'- aGggCCAGGUGCUGCugGcacgagaacauGGCGUUa-- -3'
miRNA:   3'- -CuaGGUCCACGGCGugU-----------UCGCGAagg -5'
29092 3' -55.5 NC_006146.1 + 13557 0.66 0.913427
Target:  5'- gGcgCCGGGcgccggGCUGCGCAAGCaggccggggGCUcaUCCa -3'
miRNA:   3'- -CuaGGUCCa-----CGGCGUGUUCG---------CGA--AGG- -5'
29092 3' -55.5 NC_006146.1 + 73136 0.66 0.913427
Target:  5'- aGUCCAGGuUGuuGCACuugGAGUGCa--- -3'
miRNA:   3'- cUAGGUCC-ACggCGUG---UUCGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 120802 0.66 0.919215
Target:  5'- cGGUCCGcGUgGCCGgACAAGCGgggCCg -3'
miRNA:   3'- -CUAGGUcCA-CGGCgUGUUCGCgaaGG- -5'
29092 3' -55.5 NC_006146.1 + 167735 0.66 0.930073
Target:  5'- aGAUCgCAGGUGCUcgaucaggGCGCAGGgGCc--- -3'
miRNA:   3'- -CUAG-GUCCACGG--------CGUGUUCgCGaagg -5'
29092 3' -55.5 NC_006146.1 + 2734 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 1802 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5'
29092 3' -55.5 NC_006146.1 + 40981 0.74 0.541498
Target:  5'- --gCCGuGGUGCCGCGCcGGCGCc-CCa -3'
miRNA:   3'- cuaGGU-CCACGGCGUGuUCGCGaaGG- -5'
29092 3' -55.5 NC_006146.1 + 85970 0.72 0.663701
Target:  5'- --aCCAGGUGCCGUuccaACAGGC-CUUUg -3'
miRNA:   3'- cuaGGUCCACGGCG----UGUUCGcGAAGg -5'
29092 3' -55.5 NC_006146.1 + 123300 0.71 0.714304
Target:  5'- cGAUCCcuGGcgGCCGC-CGAGUGgaUCCg -3'
miRNA:   3'- -CUAGGu-CCa-CGGCGuGUUCGCgaAGG- -5'
29092 3' -55.5 NC_006146.1 + 43741 0.7 0.72425
Target:  5'- cGggCCAGGUgGUCGCGCAuGaCGCcgUCCa -3'
miRNA:   3'- -CuaGGUCCA-CGGCGUGUuC-GCGa-AGG- -5'
29092 3' -55.5 NC_006146.1 + 144046 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 147124 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 150202 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 153280 0.69 0.781928
Target:  5'- gGGUCCAGG-GCCGC-CAuuauGCGCa--- -3'
miRNA:   3'- -CUAGGUCCaCGGCGuGUu---CGCGaagg -5'
29092 3' -55.5 NC_006146.1 + 126791 0.68 0.842961
Target:  5'- cAUCCGGGUucGgCGC-CGAGCGCgcggCCc -3'
miRNA:   3'- cUAGGUCCA--CgGCGuGUUCGCGaa--GG- -5'
29092 3' -55.5 NC_006146.1 + 870 0.68 0.854121
Target:  5'- cAUCCAGGgacugGCCGCGgGAGCagacgggggaaggccGCgcgCCg -3'
miRNA:   3'- cUAGGUCCa----CGGCGUgUUCG---------------CGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.