miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29092 5' -62.6 NC_006146.1 + 118237 0.66 0.643893
Target:  5'- cCUGGACgaggggGCgagGCUggacgCCCUCaUGCGCCa -3'
miRNA:   3'- -GACCUGa-----CG---CGGa----GGGAGgACGCGGa -5'
29092 5' -62.6 NC_006146.1 + 130608 0.66 0.643893
Target:  5'- uUGGcCUGCccgGCCUCuuuggcccgCCUCCgcccGCGCCUc -3'
miRNA:   3'- gACCuGACG---CGGAG---------GGAGGa---CGCGGA- -5'
29092 5' -62.6 NC_006146.1 + 122653 0.66 0.634084
Target:  5'- -aGGACgGCGgCgggggCCCUCCgcgcgGCGCUc -3'
miRNA:   3'- gaCCUGaCGCgGa----GGGAGGa----CGCGGa -5'
29092 5' -62.6 NC_006146.1 + 111456 0.66 0.634084
Target:  5'- -cGGGgaGUccuGCC-CCCUgcCCUGCGCCUu -3'
miRNA:   3'- gaCCUgaCG---CGGaGGGA--GGACGCGGA- -5'
29092 5' -62.6 NC_006146.1 + 106265 0.66 0.624275
Target:  5'- cCUGGcCccgGCGgaagacauCCUCCUggCCUGCGCCa -3'
miRNA:   3'- -GACCuGa--CGC--------GGAGGGa-GGACGCGGa -5'
29092 5' -62.6 NC_006146.1 + 30278 0.66 0.624275
Target:  5'- -aGGA--GCGCCguggucCCCUCCUGgGCUUc -3'
miRNA:   3'- gaCCUgaCGCGGa-----GGGAGGACgCGGA- -5'
29092 5' -62.6 NC_006146.1 + 13779 0.66 0.623294
Target:  5'- cCUGGcCUGUccuccccGCCUCCCUCCccgGCcCCc -3'
miRNA:   3'- -GACCuGACG-------CGGAGGGAGGa--CGcGGa -5'
29092 5' -62.6 NC_006146.1 + 29168 0.66 0.623294
Target:  5'- cCUGGcCUGUccuccccGCCUCCCUCCccgGCcCCc -3'
miRNA:   3'- -GACCuGACG-------CGGAGGGAGGa--CGcGGa -5'
29092 5' -62.6 NC_006146.1 + 16857 0.66 0.623294
Target:  5'- cCUGGcCUGUccuccccGCCUCCCUCCccgGCcCCc -3'
miRNA:   3'- -GACCuGACG-------CGGAGGGAGGa--CGcGGa -5'
29092 5' -62.6 NC_006146.1 + 26090 0.66 0.623294
Target:  5'- cCUGGcCUGUccuccccGCCUCCCUCCccgGCcCCc -3'
miRNA:   3'- -GACCuGACG-------CGGAGGGAGGa--CGcGGa -5'
29092 5' -62.6 NC_006146.1 + 23012 0.66 0.623294
Target:  5'- cCUGGcCUGUccuccccGCCUCCCUCCccgGCcCCc -3'
miRNA:   3'- -GACCuGACG-------CGGAGGGAGGa--CGcGGa -5'
29092 5' -62.6 NC_006146.1 + 160993 0.66 0.61447
Target:  5'- -cGGGCUccGuCGCCUCCUgCCUG-GCCg -3'
miRNA:   3'- gaCCUGA--C-GCGGAGGGaGGACgCGGa -5'
29092 5' -62.6 NC_006146.1 + 121632 0.66 0.61447
Target:  5'- cCUGGACcagauCGCC-CCCUUCUcCGCCUc -3'
miRNA:   3'- -GACCUGac---GCGGaGGGAGGAcGCGGA- -5'
29092 5' -62.6 NC_006146.1 + 101328 0.66 0.61447
Target:  5'- gUGuGGCUG-GCCUCCUUCCUGagGCa- -3'
miRNA:   3'- gAC-CUGACgCGGAGGGAGGACg-CGga -5'
29092 5' -62.6 NC_006146.1 + 54394 0.66 0.61447
Target:  5'- aUGGGugGUGCCg-CCUCCUcGCGCCg -3'
miRNA:   3'- gACCUgaCGCGGagGGAGGA-CGCGGa -5'
29092 5' -62.6 NC_006146.1 + 33170 0.66 0.61447
Target:  5'- gCUGGGCaccgccGCGCCgccgCUCggUCCUGgGCCUc -3'
miRNA:   3'- -GACCUGa-----CGCGGa---GGG--AGGACgCGGA- -5'
29092 5' -62.6 NC_006146.1 + 156846 0.66 0.604678
Target:  5'- -aGGACcGCaGCCagCCggcgCUUGCGCCUg -3'
miRNA:   3'- gaCCUGaCG-CGGagGGa---GGACGCGGA- -5'
29092 5' -62.6 NC_006146.1 + 66925 0.66 0.604678
Target:  5'- cCUGGAUgUGgGCCUgaCUUCCUGCGgCg -3'
miRNA:   3'- -GACCUG-ACgCGGAg-GGAGGACGCgGa -5'
29092 5' -62.6 NC_006146.1 + 92983 0.66 0.594904
Target:  5'- -cGGcacCUGCgagGCCgCCCgccCCUGCGCCUg -3'
miRNA:   3'- gaCCu--GACG---CGGaGGGa--GGACGCGGA- -5'
29092 5' -62.6 NC_006146.1 + 41751 0.66 0.594904
Target:  5'- cCUGaGACgggUGgGCUUCCCgccggaggcCCUGCGCCc -3'
miRNA:   3'- -GAC-CUG---ACgCGGAGGGa--------GGACGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.