miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29093 3' -56.6 NC_006146.1 + 105832 0.66 0.87609
Target:  5'- cUCCUGCCCCgcgCCgccgaguAGACGCAg--- -3'
miRNA:   3'- aAGGACGGGGa--GGac-----UCUGUGUaguc -5'
29093 3' -56.6 NC_006146.1 + 55663 0.66 0.861183
Target:  5'- aUCCcuggGCCUCUcagcugggcucCCUGGGugACAUCAu -3'
miRNA:   3'- aAGGa---CGGGGA-----------GGACUCugUGUAGUc -5'
29093 3' -56.6 NC_006146.1 + 124736 0.67 0.83727
Target:  5'- cUCUgGCCCCacccgaguUCCUGGGGCugGUCc- -3'
miRNA:   3'- aAGGaCGGGG--------AGGACUCUGugUAGuc -5'
29093 3' -56.6 NC_006146.1 + 116557 0.67 0.83727
Target:  5'- -cCCUGCUCUUcacCCUGAGAUACAgCAc -3'
miRNA:   3'- aaGGACGGGGA---GGACUCUGUGUaGUc -5'
29093 3' -56.6 NC_006146.1 + 88992 0.67 0.83727
Target:  5'- uUUCCUGaaaCUCUgCUGGGGCGCAUUu- -3'
miRNA:   3'- -AAGGACg--GGGAgGACUCUGUGUAGuc -5'
29093 3' -56.6 NC_006146.1 + 155997 0.67 0.828913
Target:  5'- cUCC-GCCaCCUCCgGGGGCACgGUCGa -3'
miRNA:   3'- aAGGaCGG-GGAGGaCUCUGUG-UAGUc -5'
29093 3' -56.6 NC_006146.1 + 60029 0.67 0.811664
Target:  5'- -gCCUGCgCCCgagCCcGAGACGCAgcgucccucugaUCGGg -3'
miRNA:   3'- aaGGACG-GGGa--GGaCUCUGUGU------------AGUC- -5'
29093 3' -56.6 NC_006146.1 + 170334 0.68 0.793757
Target:  5'- -cCCgGCCCCucUCCUGGGAggcCACGUguGg -3'
miRNA:   3'- aaGGaCGGGG--AGGACUCU---GUGUAguC- -5'
29093 3' -56.6 NC_006146.1 + 169403 0.68 0.793757
Target:  5'- -cCCgGCCCCucUCCUGGGAggcCACGUguGg -3'
miRNA:   3'- aaGGaCGGGG--AGGACUCU---GUGUAguC- -5'
29093 3' -56.6 NC_006146.1 + 168471 0.68 0.793757
Target:  5'- -cCCgGCCCCucUCCUGGGAggcCACGUguGg -3'
miRNA:   3'- aaGGaCGGGG--AGGACUCU---GUGUAguC- -5'
29093 3' -56.6 NC_006146.1 + 167539 0.68 0.793757
Target:  5'- -cCCgGCCCCucUCCUGGGAggcCACGUguGg -3'
miRNA:   3'- aaGGaCGGGG--AGGACUCU---GUGUAguC- -5'
29093 3' -56.6 NC_006146.1 + 19943 0.69 0.736788
Target:  5'- aUCCgGCCUC-CCUG-GGCAgAUCAGg -3'
miRNA:   3'- aAGGaCGGGGaGGACuCUGUgUAGUC- -5'
29093 3' -56.6 NC_006146.1 + 4792 0.69 0.696844
Target:  5'- -cCCUGCCUagaUUCUGAGAC-UGUCAGg -3'
miRNA:   3'- aaGGACGGGg--AGGACUCUGuGUAGUC- -5'
29093 3' -56.6 NC_006146.1 + 7281 0.69 0.696844
Target:  5'- aUCCUGCCCCacgccuUCCgggGAGAgGCcUCAa -3'
miRNA:   3'- aAGGACGGGG------AGGa--CUCUgUGuAGUc -5'
29093 3' -56.6 NC_006146.1 + 41885 0.7 0.686698
Target:  5'- -gCCgUGCCCCggaCCUGAGuCGCGUCu- -3'
miRNA:   3'- aaGG-ACGGGGa--GGACUCuGUGUAGuc -5'
29093 3' -56.6 NC_006146.1 + 41536 0.71 0.635459
Target:  5'- aUCCgcggGCUCCUCCUGAGGCuGC-UCGa -3'
miRNA:   3'- aAGGa---CGGGGAGGACUCUG-UGuAGUc -5'
29093 3' -56.6 NC_006146.1 + 91956 0.71 0.594365
Target:  5'- -gCCUGCCCCUuuuaggagCCUGGGGagGCAUCAc -3'
miRNA:   3'- aaGGACGGGGA--------GGACUCUg-UGUAGUc -5'
29093 3' -56.6 NC_006146.1 + 2223 0.74 0.447399
Target:  5'- gUUCCUGCgCCUCCUG-GGCACAa--- -3'
miRNA:   3'- -AAGGACGgGGAGGACuCUGUGUaguc -5'
29093 3' -56.6 NC_006146.1 + 25431 0.74 0.420379
Target:  5'- gUCCgGCCUCUCCUGGGGCAg--CAGg -3'
miRNA:   3'- aAGGaCGGGGAGGACUCUGUguaGUC- -5'
29093 3' -56.6 NC_006146.1 + 19275 0.74 0.420379
Target:  5'- gUCCgGCCUCUCCUGGGGCAg--CAGg -3'
miRNA:   3'- aAGGaCGGGGAGGACUCUGUguaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.